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Report for CCDS5217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5217.1 Public Homo sapiens 6 KATNA1 24 110 108 CCDS HistoryNCBI Gene:11104Re-query CCDS DB by CCDS ID:5217.1Re-query CCDS DB by GeneID:11104See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5217.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335647.9 ENSP00000335106.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335647.9Link to Ensembl Protein Viewer:ENSP00000335106.5Re-query CCDS DB by Nucleotide ID:ENST00000335647Re-query CCDS DB by Protein ID:ENSP00000335106
Original member Current member EBI ENST00000367411.7 ENSP00000356381.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367411.7Link to Ensembl Protein Viewer:ENSP00000356381.2Re-query CCDS DB by Nucleotide ID:ENST00000367411Re-query CCDS DB by Protein ID:ENSP00000356381
Original member Current member NCBI NM_007044.4 NP_008975.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007044.4Link to Protein Sequence:NP_008975.1Re-query CCDS DB by Nucleotide ID:NM_007044Re-query CCDS DB by Protein ID:NP_008975Link to BLAST:NP_008975.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008975.1 491 O75449-1 491 100% 0 0

Chromosomal Locations for CCDS 5217.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149595036 149595234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149597063 149597189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149597507 149597641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149598224 149598350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149601594 149601752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149603268 149603373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149604661 149604782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149623103 149623283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149632759 149632916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149638386 149638547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGAGTCTTCTTATGATTAGTGAGAATGTAAAATTGGCTCGTGAATATGCATTGCTGGGAAACTATGACT
CTGCGATGGTCTATTATCAGGGAGTTCTTGACCAAATGAACAAGTATCTGTACTCAGTCAAAGATACATA
CCTCCAGCAGAAATGGCAACAGGTTTGGCAGGAAATAAATGTGGAAGCTAAACATGTTAAAGATATCATG
AAAACACTAGAGAGCTTTAAACTGGACAGCACTCCCTTGAAAGCGGCACAGCATGACCTTCCAGCTTCTG
AGGGAGAAGTCTGGTCCATGCCTGTACCTGTTGAACGAAGACCCTCACCAGGACCTAGAAAACGCCAATC
TTCTCAGTACAGTGACCCTAAATCACATGGTAATCGTCCAAGTACAACTGTCAGAGTTCACCGTTCATCT
GCACAGAATGTTCACAATGACAGAGGGAAAGCTGTTCGTTGTCGTGAAAAGAAAGAACAGAATAAAGGAA
GAGAGGAAAAGAACAAATCACCTGCTGCAGTAACAGAACCAGAGACAAATAAATTTGATAGTACCGGATA
TGATAAAGACTTAGTAGAAGCTTTGGAAAGAGATATAATTTCCCAGAATCCCAATGTTCGATGGGATGAT
ATCGCTGATTTAGTAGAAGCTAAAAAGTTGCTTAAGGAAGCCGTAGTGTTACCAATGTGGATGCCCGAAT
TCTTTAAGGGCATTAGGAGACCATGGAAAGGAGTACTGATGGTCGGCCCACCTGGCACGGGGAAGACGCT
CCTTGCTAAAGCAGTAGCTACAGAATGCAAGACAACATTCTTCAATGTCTCTTCATCAACTTTGACTTCC
AAATACAGAGGAGAATCTGAGAAGCTTGTTCGTCTTCTGTTTGAAATGGCTCGATTTTATTCTCCAGCCA
CCATATTTATTGATGAGATAGACTCCATCTGTAGTCGCCGAGGGACTTCTGAAGAACATGAAGCAAGCAG
AAGGGTGAAAGCGGAGCTGCTGGTTCAGATGGATGGTGTTGGAGGTACTTCTGAAAATGATGACCCTTCC
AAAATGGTTATGGTTCTGGCAGCTACTAATTTTCCCTGGGATATAGATGAGGCTTTAAGACGACGCCTTG
AGAAACGAATCTATATTCCTTTGCCGTCAGCAAAAGGCAGGGAGGAGCTATTACGAATAAGTCTACGTGA
GTTGGAATTGGCTGATGATGTTGACCTTGCAAGTATAGCAGAAAACATGGAAGGTTATTCAGGTGCGGAC
ATTACCAACGTGTGCAGGGATGCGTCCTTGATGGCAATGAGAAGGCGCATTGAAGGTTTGACTCCAGAGG
AAATCCGAAATCTTTCCAAAGAAGAAATGCACATGCCTACAACTATGGAGGATTTCGAGATGGCTTTAAA
AAAGGTTTCTAAGTCAGTGTCTGCTGCAGACATTGAAAGATACGAGAAATGGATATTTGAGTTTGGATCA
TGCTAA

Translation (491 aa):
MSLLMISENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEINVEAKHVKDIM
KTLESFKLDSTPLKAAQHDLPASEGEVWSMPVPVERRPSPGPRKRQSSQYSDPKSHGNRPSTTVRVHRSS
AQNVHNDRGKAVRCREKKEQNKGREEKNKSPAAVTEPETNKFDSTGYDKDLVEALERDIISQNPNVRWDD
IADLVEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTS
KYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPS
KMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGAD
ITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHMPTTMEDFEMALKKVSKSVSAADIERYEKWIFEFGS
C


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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