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Report for CCDS34500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34500.1 Public Homo sapiens 6 FAXC 24 110 108 CCDS HistoryNCBI Gene:84553Re-query CCDS DB by CCDS ID:34500.1Re-query CCDS DB by GeneID:84553See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389677.6 ENSP00000374328.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389677.6Link to Ensembl Protein Viewer:ENSP00000374328.4Re-query CCDS DB by Nucleotide ID:ENST00000389677Re-query CCDS DB by Protein ID:ENSP00000374328
Original member Current member NCBI NM_032511.4 NP_115900.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032511.4Link to Protein Sequence:NP_115900.1Re-query CCDS DB by Nucleotide ID:NM_032511Re-query CCDS DB by Protein ID:NP_115900Link to BLAST:NP_115900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115900.1 409 Q5TGI0-1 409 100% 0 0

Chromosomal Locations for CCDS 34500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99281164 99281453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99291704 99291820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99323444 99323667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99333351 99333547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99342898 99343033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99349107 99349372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCACTGGGGGGTTGGCTTTGCTTCGTCCAGGCCGTGCGTGGTGGATCTGAGCTGGAACCAGAGCATCT
CCTTCTTCGGCTGGTGGGCCGGGTCCGAGGAGCCCTTCTCCTTTTATGGGGACATCATCGCTTTCCCTTT
GCAGGATTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTTACTTGACC
GGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCATTAGGAAACAGCAAGAGA
TTGACTCTAAAGATGCTATTATTTTGCATCAGTTTGCAAGACCTAACAATGGTGTTCCAAGTTTATCTCC
TTTCTGTTTAAAGATGGAAACTTATTTAAGGATGGCTGACTTACCGTATCAGAACTATTTTGGTGGAAAA
CTCTCTGCTCAAGGGAAAATGCCTTGGATTGAATATAATCATGAAAAAGTTTCTGGCACAGAATTCATAA
TTGACTTTCTGGAAGAGAAGCTTGGAGTGAATTTAAACAAAAACCTTGGCCCTCATGAAAGAGCCATCTC
CAGAGCGGTGACCAAGATGGTGGAGGAGCACTTCTACTGGACATTAGCTTATTGCCAGTGGGTGGACAAT
CTCAATGAGACCCGGAAGATGCTCTCTCTTAGTGGTGGTGGTCCCTTCAGCAACCTGCTGAGGTGGGTTG
TGTGCCACATAACGAAAGGAATTGTGAAACGCGAGATGCACGGCCACGGCATTGGCCGCTTCTCCGAGGA
AGAGATTTACATGCTGATGGAGAAGGACATGCGGTCTTTAGCAGGGCTTTTGGGTGATAAGAAGTACATC
ATGGGGCCCAAGCTTTCCACTCTTGACGCCACTGTCTTTGGACACTTGGCACAGGCAATGTGGACCTTAC
CAGGGACAAGACCCGAACGGCTGATCAAAGGTGAGCTGATCAACCTTGCCATGTACTGTGAGAGGATAAG
GAGGAAATTTTGGCCAGAGTGGCACCACGATGATGACAATACCATCTATGAGTCTGAGGAGAGCAGCGAA
GGCAGCAAAACCCACACCCCGCTGCTGGATTTTAGCTTTTACTCAAGGACAGAGACCTTTGAAGATGAGG
GAGCAGAAAACAGTTTTTCCAGAACCCCAGACACAGATTTTACTGGACACTCACTCTTTGATTCGGATGT
GGACATGGATGACTATACAGACCACGAACAGTGCAAGTGA

Translation (409 aa):
MHWGVGFASSRPCVVDLSWNQSISFFGWWAGSEEPFSFYGDIIAFPLQDYGGIMAGLGSDPWWKKTLYLT
GGALLAAAAYLLHELLVIRKQQEIDSKDAIILHQFARPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGK
LSAQGKMPWIEYNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYWTLAYCQWVDN
LNETRKMLSLSGGGPFSNLLRWVVCHITKGIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYI
MGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKFWPEWHHDDDNTIYESEESSE
GSKTHTPLLDFSFYSRTETFEDEGAENSFSRTPDTDFTGHSLFDSDVDMDDYTDHEQCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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