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Report for CCDS31411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31411.1 Public Homo sapiens 11 RRP8 24 110 108 CCDS HistoryNCBI Gene:23378Re-query CCDS DB by CCDS ID:31411.1Re-query CCDS DB by GeneID:23378See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254605.11 ENSP00000254605.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254605.11Link to Ensembl Protein Viewer:ENSP00000254605.6Re-query CCDS DB by Nucleotide ID:ENST00000254605Re-query CCDS DB by Protein ID:ENSP00000254605
Original member Current member NCBI NM_015324.4 NP_056139.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015324.4Link to Protein Sequence:NP_056139.1Re-query CCDS DB by Nucleotide ID:NM_015324Re-query CCDS DB by Protein ID:NP_056139Link to BLAST:NP_056139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056139.1 456 O43159 456 100% 0 0

Chromosomal Locations for CCDS 31411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6600146 6600265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6600486 6600582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6600669 6600775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6600926 6601055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6601149 6601602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6601852 6602215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6603404 6603502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGTTCGAAGAGCCTGAGTGGGCCGAGGCGGCCCCAGTAGCCGCGGGCCTTGGGCCCGTAATCTCACGAC
CTCCGCCTGCGGCCTCCTCGCAAAACAAGGGCTCCAAGCGCCGCCAGCTCTTGGCCACATTACGGGCCCT
AGAGGCAGCATCTCTTTCCCAGCATCCCCCCAGCCTATGTATAAGTGACTCTGAGGAGGAGGAGGAGGAA
AGGAAGAAGAAATGCCCCAAAAAGGCATCATTTGCCAGTGCCTCTGCTGAAGTAGGGAAGAAAGGGAAGA
AGAAATGTCAAAAACAGGGCCCACCTTGCAGTGACTCTGAGGAAGAAGTAGAAAGGAAGAAGAAATGCCA
CAAACAGGCTCTTGTTGGCAGTGACTCTGCTGAAGATGAGAAAAGAAAGAGGAAATGCCAGAAACATGCC
CCTATAAATTCAGCCCAGCACCTGGACAATGTTGACCAAACAGGTCCCAAAGCCTGGAAGGGTAGTACTA
CAAATGATCCACCAAAGCAAAGCCCTGGGTCCACTTCCCCTAAACCCCCTCATACATTAAGCCGCAAGCA
GTGGCGGAACCGGCAAAAGAACAAGAGAAGATGTAAGAACAAGTTTCAGCCACCTCAGGTGCCAGACCAG
GCCCCAGCTGAGGCCCCCACAGAGAAGACAGAGGTGTCTCCTGTTCCCAGGACAGACAGCCATGAGGCTC
GGGCAGGGGCTTTGCGAGCCCGCATGGCACAGCGGCTGGATGGGGCCCGATTTCGCTACCTCAATGAACA
GTTGTACTCAGGGCCCAGCAGTGCTGCACAGCGTCTCTTCCAGGAAGACCCTGAGGCTTTTCTTCTCTAC
CACCGCGGCTTCCAGAGCCAAGTGAAGAAGTGGCCACTGCAGCCAGTGGACCGCATCGCCAGGGATCTTC
GCCAGCGGCCTGCATCCCTAGTGGTGGCTGACTTCGGCTGTGGGGATTGCCGCTTGGCTTCAAGTATCCG
GAACCCTGTGCATTGCTTTGACTTGGCTTCTCTGGACCCTAGGGTCACTGTGTGTGACATGGCCCAGGTT
CCTCTGGAGGATGAGTCTGTGGATGTGGCTGTGTTTTGCCTTTCACTGATGGGAACCAACATCAGGGACT
TCCTAGAGGAGGCAAATAGAGTACTGAAGCCAGGGGGTCTCCTGAAAGTGGCTGAGGTCAGCAGCCGCTT
TGAGGATGTTCGAACCTTTCTGCGGGCTGTGACCAAGCTAGGCTTCAAGATTGTCTCCAAGGACCTGACC
AACAGCCATTTCTTCTTGTTTGATTTCCAAAAGACTGGGCCCCCTCTGGTAGGGCCCAAGGCTCAGCTTT
CAGGCCTGCAGCTTCAGCCATGTCTCTACAAGCGCAGGTGA

Translation (456 aa):
MFEEPEWAEAAPVAAGLGPVISRPPPAASSQNKGSKRRQLLATLRALEAASLSQHPPSLCISDSEEEEEE
RKKKCPKKASFASASAEVGKKGKKKCQKQGPPCSDSEEEVERKKKCHKQALVGSDSAEDEKRKRKCQKHA
PINSAQHLDNVDQTGPKAWKGSTTNDPPKQSPGSTSPKPPHTLSRKQWRNRQKNKRRCKNKFQPPQVPDQ
APAEAPTEKTEVSPVPRTDSHEARAGALRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLY
HRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQV
PLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT
NSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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