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Report for CCDS2561.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2561.2 Public Homo sapiens 3 TRNT1 24 110 108 CCDS HistoryNCBI Gene:51095Re-query CCDS DB by CCDS ID:2561.2Re-query CCDS DB by GeneID:51095See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2561.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251607.11 ENSP00000251607.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251607.11Link to Ensembl Protein Viewer:ENSP00000251607.6Re-query CCDS DB by Nucleotide ID:ENST00000251607Re-query CCDS DB by Protein ID:ENSP00000251607
Original member Current member EBI ENST00000434583.5 ENSP00000415100.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434583.5Link to Ensembl Protein Viewer:ENSP00000415100.1Re-query CCDS DB by Nucleotide ID:ENST00000434583Re-query CCDS DB by Protein ID:ENSP00000415100
Original member Current member EBI ENST00000698406.1 ENSP00000513700.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698406.1Link to Ensembl Protein Viewer:ENSP00000513700.1Re-query CCDS DB by Nucleotide ID:ENST00000698406Re-query CCDS DB by Protein ID:ENSP00000513700
Original member Current member EBI ENST00000698408.1 ENSP00000513701.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698408.1Link to Ensembl Protein Viewer:ENSP00000513701.1Re-query CCDS DB by Nucleotide ID:ENST00000698408Re-query CCDS DB by Protein ID:ENSP00000513701
Original member Current member EBI ENST00000698412.1 ENSP00000513705.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698412.1Link to Ensembl Protein Viewer:ENSP00000513705.1Re-query CCDS DB by Nucleotide ID:ENST00000698412Re-query CCDS DB by Protein ID:ENSP00000513705
Original member Current member NCBI NM_001367321.1 NP_001354250.1 Accepted alive Link to Nucleotide Sequence:NM_001367321.1Link to Protein Sequence:NP_001354250.1Re-query CCDS DB by Nucleotide ID:NM_001367321Re-query CCDS DB by Protein ID:NP_001354250Link to BLAST:NP_001354250.1
Original member Current member NCBI NM_001367322.1 NP_001354251.1 Accepted alive Link to Nucleotide Sequence:NM_001367322.1Link to Protein Sequence:NP_001354251.1Re-query CCDS DB by Nucleotide ID:NM_001367322Re-query CCDS DB by Protein ID:NP_001354251Link to BLAST:NP_001354251.1
Original member Current member NCBI NM_001367323.1 NP_001354252.1 Accepted alive Link to Nucleotide Sequence:NM_001367323.1Link to Protein Sequence:NP_001354252.1Re-query CCDS DB by Nucleotide ID:NM_001367323Re-query CCDS DB by Protein ID:NP_001354252Link to BLAST:NP_001354252.1
Original member Current member NCBI NM_182916.3 NP_886552.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182916.3Link to Protein Sequence:NP_886552.3Re-query CCDS DB by Nucleotide ID:NM_182916Re-query CCDS DB by Protein ID:NP_886552Link to BLAST:NP_886552.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001354250.1 434 Q96Q11-1 434 100% 0 0
NP_001354251.1 434 Q96Q11-1 434 100% 0 0
NP_001354252.1 434 Q96Q11-1 434 100% 0 0
NP_886552.3 434 Q96Q11-1 434 100% 0 0

Chromosomal Locations for CCDS 2561.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 3129041 3129188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 3137260 3137453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 3140510 3140648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 3144584 3144710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 3146430 3146623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 3147450 3147703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 3147906 3148154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGCTGAGGTGCCTGTATCATTGGCACAGGCCAGTGCTGAACCGTAGGTGGAGTAGGCTGTGCCTTCCGA
AGCAGTATCTATTCACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCACAGAAGGACTGAAGAG
TCTGACAGAATTATTTGTCAAAGAGAATCACGAATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTATTA
AATGGAGTAAAGCCTCAGGATATAGATTTTGCCACCACTGCTACCCCTACTCAAATGAAGGAGATGTTTC
AGTCGGCTGGGATTCGGATGATAAACAACAGAGGAGAAAAGCACGGAACAATTACTGCCAGGCTTCATGA
AGAAAATTTTGAGATTACTACACTACGGATTGATGTCACCACTGATGGAAGACATGCTGAGGTAGAATTT
ACAACTGACTGGCAGAAAGATGCGGAACGCAGAGATCTCACTATAAATTCTATGTTTTTAGGTTTTGATG
GCACTTTATTTGACTACTTTAATGGTTATGAAGATTTAAAAAATAAGAAAGTTAGATTTGTTGGACATGC
TAAACAGAGAATACAAGAGGATTATCTTAGAATTTTAAGATACTTCAGGTTTTATGGGAGAATTGTAGAC
AAACCTGGTGACCATGATCCTGAGACTTTGGAAGCAATTGCAGAAAATGCAAAAGGCTTGGCTGGAATAT
CAGGAGAAAGGATTTGGGTGGAACTGAAAAAAATTCTTGTTGGTAACCATGTAAATCATTTGATTCACCT
TATCTATGATCTTGATGTGGCTCCTTATATAGGTTTACCTGCTAATGCAAGTTTAGAAGAATTTGACAAA
GTCAGTAAAAATGTTGATGGTTTTTCACCAAAGCCAGTGACTCTTTTGGCCTCATTATTCAAAGTACAAG
ATGATGTCACAAAATTGGATTTGAGGTTGAAGATCGCAAAAGAGGAGAAAAACCTTGGCTTATTTATAGT
TAAAAATAGGAAAGATTTAATTAAAGCAACAGATAGTTCAGACCCATTGAAACCCTATCAAGACTTCATT
ATAGATTCTAGGGAACCTGATGCAACTACTCGTGTATGTGAACTACTGAAGTACCAAGGAGAGCACTGTC
TCCTAAAGGAAATGCAGCAGTGGTCCATTCCTCCATTTCCTGTAAGTGGCCATGACATCAGAAAAGTGGG
CATTTCTTCAGGAAAAGAAATTGGGGCTCTATTACAACAGTTGCGAGAACAGTGGAAAAAAAGTGGTTAC
CAAATGGAAAAAGATGAACTTCTGAGTTACATAAAGAAGACCTAA

Translation (434 aa):
MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLL
NGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEF
TTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVD
KPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDK
VSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFI
IDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
QMEKDELLSYIKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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