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Report for CCDS2956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2956.1 Public Homo sapiens 3 DPPA2 24 110 108 CCDS HistoryNCBI Gene:151871Re-query CCDS DB by CCDS ID:2956.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478945.1 ENSP00000417710.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000478945.1Link to Ensembl Protein Viewer:ENSP00000417710.1Re-query CCDS DB by Nucleotide ID:ENST00000478945Re-query CCDS DB by Protein ID:ENSP00000417710
Original member Current member NCBI NM_138815.4 NP_620170.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138815.4Link to Protein Sequence:NP_620170.3Re-query CCDS DB by Nucleotide ID:NM_138815Re-query CCDS DB by Protein ID:NP_620170Link to BLAST:NP_620170.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620170.3 298 Q7Z7J5 298 100% 0 0

Chromosomal Locations for CCDS 2956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109300393 109300435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109304475 109304670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109308032 109308293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109309026 109309079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109309170 109309330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109312545 109312692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109314510 109314542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGTCAGATGCAAATTTGGATAGCAGCAAGAAGAATTTCTTGGAGGGGGAAGTAGATGATGAGGAAAGTG
TGATTTTGACACTGGTGCCAGTTAAAGATGACGCAAATATGGAACAAATGGAACCAAGCGTTTCTTCAAC
TTCTGATGTCAAACTGGAGAAGCCTAAGAAATACAATCCAGGTCATCTACTTCAAACAAATGAGCAATTT
ACAGCTCCACAAAAAGCTAGATGCAAAATACCAGCCCTTCCCTTGCCGACCATTTTGCCTCCCATTAATA
AGGTGTGTCGGGACACTTTGCGGGACTGGTGTCAACAACTCGGTTTGAGTACTAATGGCAAGAAAATCGA
AGTTTATCTGAGGCTTCATAGGCATGCTTACCCTGAACAACGGCAAGATATGCCTGAAATGTCACAAGAG
ACCAGATTACAGCGATGTTCGAGGAAACGCAAGGCAGTGACCAAGAGAGCAAGGCTTCAGAGAAGTTATG
AGATGAATGAGAGAGCAGAAGAGACCAATACAGTTGAAGTGATAACTTCAGCACCGGGAGCCATGTTGGC
ATCATGGGCAAGAATTGCTGCAAGAGCTGTTCAGCCTAAGGCTTTGAATTCATGTTCCATTCCTGTTTCT
GTTGAGGCCTTTTTGATGCAAGCCTCTGGCGTCAGGTGGTGTGTGGTCCATGGCAGACTTCTCTCGGCAG
ACACAAAGGGTTGGGTACGCCTGCAGTTTCATGCAGGTCAGGCCTGGGTGCCTACCACTCACAGGAGGAT
GATTTCTCTCTTCTTGTTACCTGCCTGCATTTTCCCATCCCCAGGCATAGAAGATAATATGTTATGCCCC
GACTGTGCTAAGAGGAATAAGAAGATGATGAAAAGATTAATGACAGTAGAGAAGTAG

Translation (298 aa):
MSDANLDSSKKNFLEGEVDDEESVILTLVPVKDDANMEQMEPSVSSTSDVKLEKPKKYNPGHLLQTNEQF
TAPQKARCKIPALPLPTILPPINKVCRDTLRDWCQQLGLSTNGKKIEVYLRLHRHAYPEQRQDMPEMSQE
TRLQRCSRKRKAVTKRARLQRSYEMNERAEETNTVEVITSAPGAMLASWARIAARAVQPKALNSCSIPVS
VEAFLMQASGVRWCVVHGRLLSADTKGWVRLQFHAGQAWVPTTHRRMISLFLLPACIFPSPGIEDNMLCP
DCAKRNKKMMKRLMTVEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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