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Report for CCDS16684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16684.1 Public Mus musculus 2 Hdc 23 108 98 CCDS HistoryNCBI Gene:15186Re-query CCDS DB by CCDS ID:16684.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028838.4 ENSMUSP00000028838.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028838.4Link to Ensembl Protein Viewer:ENSMUSP00000028838.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028838Re-query CCDS DB by Protein ID:ENSMUSP00000028838
Original member Current member NCBI NM_008230.6 NP_032256.3 Accepted alive Link to Nucleotide Sequence:NM_008230.6Link to Protein Sequence:NP_032256.3Re-query CCDS DB by Nucleotide ID:NM_008230Re-query CCDS DB by Protein ID:NP_032256Link to BLAST:NP_032256.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032256.3 662 P23738 662 100% 0 0

Chromosomal Locations for CCDS 16684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126593961 126594686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126594837 126594938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126597871 126597969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126601614 126601704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126601787 126601949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126602961 126603027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126603842 126603985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126604241 126604375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126606360 126606482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126607297 126607410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126616176 126616348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126618518 126618569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGATGGAGCCCTGTGAATACCGTGAATACCGTGAATACTACCGAGCTAGAGGGAAAGAGATGGTGGATT
ACATCTCCCAGTACCTGAGCACTGTGCGGGAGAGGCAGGTGACTCCAAATGTGCAGCCTGGATACCTGCG
AGCCCAGCTACCTGCGAGTGCTCCCGAGGAACCCGACAGCTGGGACAGCATCTTTGGGGACATTGAACGA
GTCATCATGCCTGGGGTGGTTCACTGGCAGAGCCCCCACATGCACGCCTACTATCCTGCTCTTACCTCAT
GGCCATCCCTGCTAGGAGACATGCTGGCCGATGCCATTAACTGCTTAGGATTCACGTGGGCATCTAGCCC
AGCTTGCACAGAGCTGGAGATGAACATCATGGACTGGCTGGCGAAGATGCTGGGGCTCCCGGAGTACTTC
CTGCACCACCATCCCAGCAGCCGAGGGGGAGGTGTCTTACAGAGCACTGTCAGCGAATCCACTTTAATTG
CCCTGCTGGCAGCAAGAAAGAACAAAATCCTAGCAATGAAAGCATGCGAGCCCGATGCTAATGAGTCCTC
CCTGAACGCTCGGCTCGTTGCCTACACCTCTGATCAGGCTCACTCTTCAGTGGAGAAGGCTGGCTTGATT
TCCCTTGTGAAGATCAGATTTCTACCTGTGGACGACAACTTCTCACTCCGAGGAGAAGCTCTCCAGAAAG
CTATTGAGGAAGACAAGCAACAGGGCTTGGTGCCTGTGTTTGTCTGTGCAACGTTAGGGACTACTGGAGT
CTGTGCATTTGACAGGCTGTCAGAACTGGGGCCCATCTGTGCCAGTGAGGGACTGTGGCTCCACGTCGAT
GCTGCTTATGCAGGCACGGCCTTTCTGTGCCCTGAGCTCCGGGGGTTCCTGGAGGGCATCGAGTACGCTG
ACTCCTTCACCTTTAACCCTTCCAAGTGGATGATGGTACACTTTGACTGTACTGGATTCTGGGTCAAGGA
CAAGTACAAGCTGCAGCAGACCTTTAGTGTGAACCCCATCTACCTCCGACATGCCAACTCTGGTGCAGCC
ACGGACTTCATGCATTGGCAGATCCCCTTGAGCCGGCGCTTTCGCTCCATTAAGCTGTGGTTTGTGATTC
GGTCCTTCGGGGTGAAGAATCTTCAAGCACATGTCAGACACGGCACAGAAATGGCTAAATACTTTGAATC
TCTGGTCAGAAGCGACCCTTCCTTCGAAATTCCTGCTAAGAGGCACCTTGGTTTGGTGGTTTTCCGTCTG
AAGGGTCCTAATTGTCTCACAGAAAGTGTGTTAAAGGAAATAGCCAAAGCTGGCCAGCTCTTTCTCATCC
CGGCTACTATCCAAGACAAGCTGATCATCCGTTTCACTGTGACATCCCAGTTTACCACCAAGGAGGACAT
CCTGAGAGATTGGCACCTCATCCAAGAGGCTGCTAACCTTGTCCTGAGCCAGCACTGCACTTCCCAGCCG
AGCCCTCGGGCCAAGAACGTCATCCCGCCACCGCCAGGGACCAGAGGGCTATCCCTGGAGTCAGTCAGCG
AGGGAGGAGATGACCCAGCACAGGCCCGGAAGATCATCAAGCAGCCAGGAGCCAGTCTGGCGAGAAGGGA
AGGCGGCTCTGATCTGGAAACGATGCCGGATCCCTTTGATGATTGCTTCTCGGAAGAGGCCCCCAACACC
ACCAAGCACAAGCTGTCGTCCTTTCTGTTCAGTTACTTGTCCGTCCAGAACAGGAGGAAGACAACGCGGT
CCCTCAGCTGCAACAGTGTGCCTATGAGTGCCCAGAAGTCACTCCCCGCAGACGCTTCACTGAAGAATGG
GGGCTCCTTCCGGGCCAGAATCTTTTCCGGGTTCCCAGAACAAATGATGATGATGAAGAAAGGTGCCTTC
AAAAAGCTGATCAAGTTCTACAGCGTCCCCAGCTTTCCTGAATGCAGTTCTCAGTGTGCTCGCCAGCTAC
CGTGCTGCCCCCTGGAGGCCATGGTGTAG

Translation (662 aa):
MMEPCEYREYREYYRARGKEMVDYISQYLSTVRERQVTPNVQPGYLRAQLPASAPEEPDSWDSIFGDIER
VIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNIMDWLAKMLGLPEYF
LHHHPSSRGGGVLQSTVSESTLIALLAARKNKILAMKACEPDANESSLNARLVAYTSDQAHSSVEKAGLI
SLVKIRFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGVCAFDRLSELGPICASEGLWLHVD
AAYAGTAFLCPELRGFLEGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGAA
TDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRSDPSFEIPAKRHLGLVVFRL
KGPNCLTESVLKEIAKAGQLFLIPATIQDKLIIRFTVTSQFTTKEDILRDWHLIQEAANLVLSQHCTSQP
SPRAKNVIPPPPGTRGLSLESVSEGGDDPAQARKIIKQPGASLARREGGSDLETMPDPFDDCFSEEAPNT
TKHKLSSFLFSYLSVQNRRKTTRSLSCNSVPMSAQKSLPADASLKNGGSFRARIFSGFPEQMMMMKKGAF
KKLIKFYSVPSFPECSSQCARQLPCCPLEAMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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