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Report for CCDS23783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23783.1 Public Mus musculus 10 Hdac2 23 108 98 CCDS HistoryNCBI Gene:15182Re-query CCDS DB by CCDS ID:23783.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019911.13 ENSMUSP00000019911.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019911.13Link to Ensembl Protein Viewer:ENSMUSP00000019911.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019911Re-query CCDS DB by Protein ID:ENSMUSP00000019911
Original member Current member NCBI NM_008229.2 NP_032255.2 Accepted alive Link to Nucleotide Sequence:NM_008229.2Link to Protein Sequence:NP_032255.2Re-query CCDS DB by Nucleotide ID:NM_008229Re-query CCDS DB by Protein ID:NP_032255Link to BLAST:NP_032255.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032255.2 488 P70288 488 99.7951% 0 1

Chromosomal Locations for CCDS 23783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 36974752 36974803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36985127 36985239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36986307 36986424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36988080 36988154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36989150 36989288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36991757 36991898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36993608 36993700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36993776 36993884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36996989 36997129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36997394 36997502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36997967 36998097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 36998414 36998569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37000369 37000426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37001529 37001559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCGTACAGTCAAGGAGGCGGCAAGAAGAAAGTGTGCTACTACTATGATGGTGATATTGGCAATTATT
ATTATGGCCAGGGTCATCCCATGAAGCCTCATAGAATCCGGATGACTCATAACTTGCTGCTAAATTATGG
TTTATACCGAAAAATGGAAATATATAGGCCTCATAAAGCCACTGCTGAAGAAATGACTAAATACCACAGC
GATGAGTATATCAAGTTTCTACGATCAATAAGACCAGATAATATGTCTGAGTACAGTAAGCAGATGCAGA
GATTTAACGTCGGAGAAGATTGTCCGGTGTTTGATGGACTCTTTGAGTTTTGTCAGCTCTCCACGGGTGG
TTCAGTTGCTGGGGCTGTGAAATTAAACCGGCAACAAACTGATATGGCTGTCAATTGGGCTGGAGGACTA
CATCATGCCAAGAAGTCAGAAGCATCAGGGTTCTGCTATGTTAATGATATTGTGCTTGCCATCCTCGAAT
TACTTAAGTATCATCAGAGAGTCTTATATATTGACATAGACATCCACCATGGTGATGGTGTTGAGGAAGC
TTTTTATACAACAGATCGCGTGATGACCGTCTCATTCCATAAATATGGGGAATACTTTCCTGGAACAGGA
GACTTGAGGGATATTGGTGCTGGAAAGGGAAAATACTATGCTGTCAATTTTCCCATGAGAGATGGTATAG
ATGATGAATCATATGGACAAATTTTTAAGCCTATCATCTCAAAAGTGATGGAGATGTACCAGCCTAGCGC
GGTGGTGCTGCAGTGTGGCGCAGACTCCCTGTCTGGGGACAGGCTTGGTTGTTTCAATCTAACTGTCAAA
GGTCATGCTAAATGTGTAGAAGTAGTGAAAACTTTTAACTTGCCATTGCTGATGCTCGGTGGAGGAGGCT
ACACAATCCGGAATGTTGCCCGATGTTGGACATATGAGACTGCAGTTGCCCTTGATTGTGAAATTCCCAA
TGAGTTGCCATATAATGATTACTTTGAGTATTTTGGACCAGACTTCAAACTGCATATTAGTCCTTCAAAC
ATGACAAACCAGAACACTCCAGAATATATGGAAAAGATAAAACAGCGTTTATTTGAAAATCTACGTATGT
TACCACATGCACCTGGTGTTCAAATGCAAGCTATTCCAGAGGATGCTGTTCATGAAGACAGTGGAGATGA
GGATGGAGAAGACCCGGACAAAAGAATTTCCATTCGAGCATCAGACAAACGGATAGCTTGCGATGAAGAG
TTTTCAGATTCTGAGGATGAAGGTGAAGGAGGTCGTAGGAATGTTGCTGATCATAAGAAAGGAGCAAAGA
AGGCTAGGATTGAAGAAGACAAGAAGGAGACAGAGGACAAGAAGACAGATGTTAAGGAAGAAGACAAATC
CAAGGACAATAGTGGTGAGAAAACAGACCCCAAAGGAGCCAAGTCAGAACAACTCAGCAACCCTTGA

Translation (488 aa):
MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHS
DEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGL
HHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVK
GHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSN
MTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDPKGAKSEQLSNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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