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Report for CCDS44292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44292.1 Public Homo sapiens 1 INAVA 24 110 108 CCDS HistoryNCBI Gene:55765Re-query CCDS DB by CCDS ID:44292.1Re-query CCDS DB by GeneID:55765See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413687.3 ENSP00000392105.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000413687.3Link to Ensembl Protein Viewer:ENSP00000392105.2Re-query CCDS DB by Nucleotide ID:ENST00000413687Re-query CCDS DB by Protein ID:ENSP00000392105
Original member Current member NCBI NM_001142569.3 NP_001136041.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142569.3Link to Protein Sequence:NP_001136041.1Re-query CCDS DB by Nucleotide ID:NM_001142569Re-query CCDS DB by Protein ID:NP_001136041Link to BLAST:NP_001136041.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136041.1 578 Q3KP66-3 578 100% 0 0

Chromosomal Locations for CCDS 44292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 200898401 200898455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200899473 200899597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200900104 200900220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200900937 200901159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200907834 200907887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200908730 200908940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200909224 200909397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200911453 200912137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200913537 200913629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGAGAGTAAGGATGAGGTCAGCGACACCGACAGTGGCATCATCCTGCAGTCTGGCCCCGACAGCCCGG
TCTCCCCAATGAAGGAGCTGACCCATGCAGTGCACAAGCAGCAGAGGGCCCTGGAAGCGAGGCTGGAGGC
CTGCCTGGAGGAGCTGAGGAGACTCTGCCTTCGGGAAGCGGAGCTGACGGGCACCTTGCCAGCGGAGTAT
CCCCTCAAACCAGGGGAAAAGGCCCCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGATGACT
GGGCCTTGCACAGAGAGGACCCCCTAAGCAGCCTGGAGCGCCAGCTGGCCCTGCAGCTGCAGATCACAGA
GGCAGCCCGTCGGCTGTGCCTGGAGGAGAACCTCAGCAGGCAGGCTCGGCGGCAGCGGAAGCACTCCATG
CTGCAGGAGGAGAAGAAGCTGCAGGAGCTCCAGCGCTGCCTGGTCGAGCGGCGGCGCAATAGCGAGCCAC
CTCCGGCTGCTGCTCTCCCCCTGGGCCGAGAGCTCAGTGCCTCTGATGACAGCTCCCTGTCAGATGGGCT
CCTCCTGGAGGAAGAGGAATCCCAAGTGCCAAAACCTCCTCCAGAGTCTCCAGCCCCACCTTCTCGGCCT
CTCCCACCCCAAACCCTTGAGGGTCTGCAGCCAACAGGACCTGAGGCTGGGAGCCCAGAACGGGCTCCAG
TCCAGAACAGCCCCTGGAAGGAAACCAGCCTGGACCACCCCTATGAGAAGCCCAGGAAGTCTTCTGAGCC
CTGGAGCGAGTCCAGCAGCCCAGCCACCACACCACAGGATGGGCCCAGTGCCTCCAGCCTGTGGCTTCTG
GAGCCTGCCTCCTACCACGTGGTTCCCATCCGTGGTGTTCCTGGCCAGTGGCAGGGCCGCACCAGTGCCC
CAGCCACCCCTGAGATACAGGGGAGGAGGGGCCAGTCGCAGTCTCTGAGGGTGGATTCCTTCCGGGCGGG
TCCTGAGGGCCGAGGTCGCAGCGCCTTTCCCCGCCGCCGCCCCACTCACTACACGGTGACAGTGCCAGAT
TCCTGCTTTCCCGCGACCAAGCCCCCGCTGCCCCACGCCGCCTGCCACTCCTGCTCAGAAGACAGTGGCT
CTGACGTCTCCAGCATCTCCCACCCCACTTCGCCGGGCAGCAGCAGCCCCGACATCTCCTTTCTGCAGCC
TCTCTCCCCTCCCAAGACCCATCGTCACCGCGGGGCCTGGGTCCCAGCCGGCAGCAGAGAGCTGGTCGCC
CACCACCCCAAGCTACTGCTGCCGCCTGGCTATTTCCCGGCGGGGCGGTACGTGGTGGTGGCTGAGAGCC
CCCTGCCGCCTGGCGAGTGGGAGCTGCGCCGCGCAGCCCCGGGCCCTGCTTACGAGGAGGAGGGCACTCC
CCTGCGCTACCAGCGTCTGGTGCCCTCCCGCAGCCGCATCGTGCGGACGCCCTCCCTGAAGGACAGCCCG
GCAGGCCGGGGGCTCAGCAAGGCCGCCGTGTCCGAGGAGCTCAAGTGGTGGCACGAGCGTGCACGCCTCC
GGAGCACCCGCCCCCACTCACTGGACCGCCAAGGAGCTTTCCGGGTCAGGAGCCTGCCCCTTGGGAGAGA
GGGCTTCGGACGAGCCCTGGGACCCCGGGCACAGGTGCCCACAGTTTGTGTGCTGCGGAGATCGCCTGAT
GGGGCCCCTGTGCAAGTCTTTGTACCTGAAAAAGGAGAGATCATCAGCCAGGTGTAA

Translation (578 aa):
MESKDEVSDTDSGIILQSGPDSPVSPMKELTHAVHKQQRALEARLEACLEELRRLCLREAELTGTLPAEY
PLKPGEKAPKVRRRIGAAYKLDDWALHREDPLSSLERQLALQLQITEAARRLCLEENLSRQARRQRKHSM
LQEEKKLQELQRCLVERRRNSEPPPAAALPLGRELSASDDSSLSDGLLLEEEESQVPKPPPESPAPPSRP
LPPQTLEGLQPTGPEAGSPERAPVQNSPWKETSLDHPYEKPRKSSEPWSESSSPATTPQDGPSASSLWLL
EPASYHVVPIRGVPGQWQGRTSAPATPEIQGRRGQSQSLRVDSFRAGPEGRGRSAFPRRRPTHYTVTVPD
SCFPATKPPLPHAACHSCSEDSGSDVSSISHPTSPGSSSPDISFLQPLSPPKTHRHRGAWVPAGSRELVA
HHPKLLLPPGYFPAGRYVVVAESPLPPGEWELRRAAPGPAYEEEGTPLRYQRLVPSRSRIVRTPSLKDSP
AGRGLSKAAVSEELKWWHERARLRSTRPHSLDRQGAFRVRSLPLGREGFGRALGPRAQVPTVCVLRRSPD
GAPVQVFVPEKGEIISQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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