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Report for CCDS52221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52221.1 Public Mus musculus 7 Siglecg 23 108 98 CCDS HistoryNCBI Gene:243958Re-query CCDS DB by CCDS ID:52221.1Re-query CCDS DB by GeneID:243958See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005592.6 ENSMUSP00000005592.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005592.6Link to Ensembl Protein Viewer:ENSMUSP00000005592.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005592Re-query CCDS DB by Protein ID:ENSMUSP00000005592
Original member NCBI NM_172900.3 NP_766488.2 Updated not alive Link to Nucleotide Sequence:NM_172900.3Link to Protein Sequence:NP_766488.2Re-query CCDS DB by Nucleotide ID:NM_172900Re-query CCDS DB by Protein ID:NP_766488
Current member NCBI NM_172900.4 NP_766488.2 Accepted alive Link to Nucleotide Sequence:NM_172900.4Link to Protein Sequence:NP_766488.2Re-query CCDS DB by Nucleotide ID:NM_172900Re-query CCDS DB by Protein ID:NP_766488Link to BLAST:NP_766488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766488.2 688 Q80ZE3 688 100% 0 0

Chromosomal Locations for CCDS 52221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43408560 43408599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43408731 43409108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43409243 43409521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43410509 43410556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43410943 43411206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43411414 43411461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43411562 43411819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43411890 43412174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43412432 43412519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43412615 43412726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43417811 43418077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGTCACTGCTGCTGTTCCTGCTGTCCTTCCTGTTGGATGGGCCTCAAGGTCAGATGGAGAGCTACTTCC
TACAGGTGCAGAGAATTGTGAAGGCACAGGAGGGTCTGTGCATCTTCGTGCCCTGCTCCTTCTCCTCCCC
TGAGGGAAAATGGCTTAACCGTTCCCCACTTTATGGCTACTGGTTCAAAGGCATCAGAAAACCATCACTT
TCATTTCCAGTGGCCACAAATAACAAAGATAAAGTGTTAGAATGGGAAGCCCGAGGGCGCTTCCAGCTCT
TGGGGGATATCTCTAAAAAGAACTGTTCCTTGCTAATCAAAGATGTTCAGTGGGGAGACTCAACAAACTA
TTTCTTCCGGATGGAGAGAGGATTTGAGAGATTCAGTTTCAAGGAGGAGTTCAGGCTACAAGTGGAAGCC
CTGACTCAGAAGCCAGATATCTTCATTCCTGAGGTCCTGGAGCCTGGGGAGCCAGTGACCGTTGTCTGCT
TGTTTTCCTGGACCTTCAACCAATGCCCAGCTCCTTCTTTCTCCTGGATGGGGGATGCTGTCTCCTTCCA
AGAAAGCAGACCGCACACATCCAATTACTCAGTTCTGAGCTTTATCCCAGGACTTCAACACCATGATACT
GAGCTCACATGTCAGCTGGACTTCTCTAGAATGAGCACACAAAGGACTGTCCGACTAAGAGTGGCCTATG
CCCCCAGATCTCTTGCTATCAGCATTTTCCATGACAATGTATCAGTCCCAGACTTGCATGAGAATCCTTC
ACATCTGGAAGTTCAGCAAGGCCAGTCTCTTCGCCTCCTCTGTACTGCTGACAGCCAGCCCCCTGCTACA
CTGAGCTGGGTCCTAGAGGACCAAGTCCTTTCTTGGTCTAGCCCTGTGGGGTCGAGAACCCTGGCACTAG
AGCTGCCCTGGGTGAAAGCTGGGGACTCTGGACACTACACTTGCCAAGCAGAGAATAGGCTGGGCTCCCA
GCAACATACCCTGGACCTCTCTGTGCTGTACCCCCCACAGGACCTGAGAGTGACTGTTTCCCAAGCAAAC
AGGACAGTGTTGGAAATCCTCAGGAATGCCATCTCCCTCCCAGTCCTGGAGGGCCAAAGCCTGTGCCTAG
TCTGTGTCACCTATAGCAATCCCCCAGCCAATGTGAGTTGGGCTTGGGTGACACAGACCCTGATCCCAAT
CCAGTCTTCAGAGCCTGGGGTCCTGGAGCTGCCTCTGGTCCAGAGAGAACATGAAGGAGAATTCACCTGT
GCTGCACAGAACCCACTGGGTGCCCAGCGCATCTCTCTGAGCCTCTCTGTGCACTACCCGCCCCAGATGT
CCAGCCCCTCCTGCTCCTGGGAGGCCAAGGGTCTGCACTGCAACTGCTCCTCCAGAGCCTGGCCTGCCCC
CTCCCTGCGCTGGCGGCTGGGGGAGGGGCTGCTGGAGGGGAACAGCAGCAATGCCTCCTTCACAGTCACT
TTCAGCTCACTTGGACCCTGGGTCAACAGCTCCCTGAGCCTCCTTCAGGAGCTGGGGCCCAGCCTCTGGC
TCAGCTGTGAGTCCTGGAACACCCATGGAGCCCAGACCACCTCTGTCCTGCTGCTACCTGATAAAGACAG
TGCCACAGCATTCTCCAAGGGAGCAGTTTTGGGCTTTGGCATCACAGCCCTCCTTGCCCTGTGCCTCATC
GTGGTCATCGTGAAGACCCTCCAGAAGAAAGGAACCCAGGAGGAACCCTCCAGGCCCAAGCTCTCCCGGG
GCAGCACGATCCTGGACTACATCAATGTGGTCCCCAAGACCAGGTCCCTGGCTCGGAATTGGAAAGCTGA
ACCAGATGCCCCTTCTAGGAGCTCACCCCTGGACACTCACTTCCCTAAACCAAAGAAGAAGCAAAAGGAC
CCACATTTCACGTACCCTGGTTGCCCAGATCCCACATCATCCTCTCAGGTCCCAGTCTCTGAGAATAACC
CGGAAGAACTCCACTATGCTGCTCTCAACTTCTCCCGCCTGAGACTGCAGGAGACCCAGGATCCCCAAGA
CACCTATTCTGATTACACAGAGGTCAGAGTCCACTGA

Translation (688 aa):
MSLLLFLLSFLLDGPQGQMESYFLQVQRIVKAQEGLCIFVPCSFSSPEGKWLNRSPLYGYWFKGIRKPSL
SFPVATNNKDKVLEWEARGRFQLLGDISKKNCSLLIKDVQWGDSTNYFFRMERGFERFSFKEEFRLQVEA
LTQKPDIFIPEVLEPGEPVTVVCLFSWTFNQCPAPSFSWMGDAVSFQESRPHTSNYSVLSFIPGLQHHDT
ELTCQLDFSRMSTQRTVRLRVAYAPRSLAISIFHDNVSVPDLHENPSHLEVQQGQSLRLLCTADSQPPAT
LSWVLEDQVLSWSSPVGSRTLALELPWVKAGDSGHYTCQAENRLGSQQHTLDLSVLYPPQDLRVTVSQAN
RTVLEILRNAISLPVLEGQSLCLVCVTYSNPPANVSWAWVTQTLIPIQSSEPGVLELPLVQREHEGEFTC
AAQNPLGAQRISLSLSVHYPPQMSSPSCSWEAKGLHCNCSSRAWPAPSLRWRLGEGLLEGNSSNASFTVT
FSSLGPWVNSSLSLLQELGPSLWLSCESWNTHGAQTTSVLLLPDKDSATAFSKGAVLGFGITALLALCLI
VVIVKTLQKKGTQEEPSRPKLSRGSTILDYINVVPKTRSLARNWKAEPDAPSRSSPLDTHFPKPKKKQKD
PHFTYPGCPDPTSSSQVPVSENNPEELHYAALNFSRLRLQETQDPQDTYSDYTEVRVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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