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Report for CCDS45704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45704.1 Public Homo sapiens 17 CCDC43 24 110 108 CCDS HistoryNCBI Gene:124808Re-query CCDS DB by CCDS ID:45704.1Re-query CCDS DB by GeneID:124808See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45704.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315286.13 ENSP00000323782.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315286.13Link to Ensembl Protein Viewer:ENSP00000323782.7Re-query CCDS DB by Nucleotide ID:ENST00000315286Re-query CCDS DB by Protein ID:ENSP00000323782
Original member Current member NCBI NM_144609.3 NP_653210.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144609.3Link to Protein Sequence:NP_653210.2Re-query CCDS DB by Nucleotide ID:NM_144609Re-query CCDS DB by Protein ID:NP_653210Link to BLAST:NP_653210.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653210.2 224 Q96MW1-1 224 100% 0 0

Chromosomal Locations for CCDS 45704.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44678856 44679043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44680585 44680643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44682003 44682138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44683872 44683959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44689550 44689753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCGGCGCCCAGCGAAGTGGCCGCGATAGCCCCTGGCGAAGGCGATGGCGGAGGCGGCGGCTTTGGCT
CCTGGCTGGACGGACGGTTGGAGGCACTGGGAGTGGACCGAGCCGTTTATGGAGCCTACATCTTGGGTAT
CCTGCAGGAGGAGGAGGAAGAAGAGAAGCTGGACGCTCTGCAGGGGATCCTCTCTGCTTTCCTGGAAGAA
GATTCCCTCCTTAATATCTGCAAGGAGATTGTGGAACGATGGTCAGAAACTCAGAATGTTGTCACCAAAG
TGAAAAAAGAAGATGAAGTACAGGCCATTGCCACCCTAATTGAGAAGCAGGCACAAATCGTAGTAAAGCC
AAGGATGGTGTCAGAAGAGGAGAAGCAGAGAAAAGCTGCCCTCCTGGCCCAGTATGCTGATGTGACAGAT
GAAGAGGATGAAGCAGATGAGAAGGATGATTCAGGTGCTACCACAATGAACATTGGTTCTGACAAACTTC
TGTTCCGAAACACCAATGTGGAAGATGTCCTTAATGCCCGAAAACTGGAGCGAGACTCACTTCGGGATGA
ATCCCAAAGGAAGAAGGAACAGGACAAGCTGCAGAGGGAGAGAGACAAACTAGCCAAGCAGGAGCGCAAG
GAAAAGGAAAAAAAAAGGACACAGAGAGGGGAGCGAAAGCGATAA

Translation (224 aa):
MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDALQGILSAFLEE
DSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTD
EEDEADEKDDSGATTMNIGSDKLLFRNTNVEDVLNARKLERDSLRDESQRKKEQDKLQRERDKLAKQERK
EKEKKRTQRGERKR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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