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Report for CCDS56990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56990.1 Public Mus musculus 15 H1f0 23 108 98 CCDS HistoryNCBI Gene:14958Re-query CCDS DB by CCDS ID:56990.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180086.2 ENSMUSP00000137309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180086.2Link to Ensembl Protein Viewer:ENSMUSP00000137309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180086Re-query CCDS DB by Protein ID:ENSMUSP00000137309
Original member Current member NCBI NM_008197.3 NP_032223.2 Accepted alive Link to Nucleotide Sequence:NM_008197.3Link to Protein Sequence:NP_032223.2Re-query CCDS DB by Nucleotide ID:NM_008197Re-query CCDS DB by Protein ID:NP_032223Link to BLAST:NP_032223.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032223.2 194 P10922 194 100% 0 0

Chromosomal Locations for CCDS 56990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79028722 79029306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGACCGAGAACTCCACCTCCGCCCCGGCGGCGAAGCCCAAACGGGCCAAGGCTTCCAAGAAGTCCACGG
ACCACCCCAAGTATTCAGACATGATCGTGGCTGCTATCCAGGCAGAGAAGAACCGTGCCGGCTCCTCGCG
CCAGTCCATCCAAAAGTATATCAAGAGCCACTACAAGGTGGGTGAGAACGCCGACTCCCAGATCAAGTTG
TCCATCAAGCGCCTAGTGACCACCGGTGTTCTCAAGCAAACCAAAGGGGTGGGCGCCTCGGGGTCCTTCA
GGCTGGCCAAGGGCGATGAGCCCAAAAGGTCGGTGGCTTTCAAGAAGACCAAGAAGGAAGTCAAGAAAGT
GGCCACTCCAAAGAAGGCAGCCAAGCCCAAGAAGGCTGCCTCCAAAGCCCCAAGCAAGAAACCCAAAGCC
ACCCCTGTCAAGAAGGCCAAGAAGAAGCCGGCTGCCACGCCCAAGAAAGCCAAAAAGCCCAAGGTTGTCA
AAGTCAAACCAGTCAAGGCCTCCAAACCCAAGAAGGCCAAAACCGTGAAGCCCAAAGCCAAGTCGAGTGC
CAAGAGGGCCAGCAAGAAGAAGTGA

Translation (194 aa):
MTENSTSAPAAKPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKL
SIKRLVTTGVLKQTKGVGASGSFRLAKGDEPKRSVAFKKTKKEVKKVATPKKAAKPKKAASKAPSKKPKA
TPVKKAKKKPAATPKKAKKPKVVKVKPVKASKPKKAKTVKPKAKSSAKRASKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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