NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS90997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90997.1 Public Homo sapiens 1 ODF2L 24 110 108 CCDS HistoryNCBI Gene:57489Re-query CCDS DB by CCDS ID:90997.1Re-query CCDS DB by GeneID:57489See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000460698.7 ENSP00000433092.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000460698.7Link to Ensembl Protein Viewer:ENSP00000433092.2Re-query CCDS DB by Nucleotide ID:ENST00000460698Re-query CCDS DB by Protein ID:ENSP00000433092
Original member Current member EBI ENST00000696303.1 ENSP00000512541.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696303.1Link to Ensembl Protein Viewer:ENSP00000512541.1Re-query CCDS DB by Nucleotide ID:ENST00000696303Re-query CCDS DB by Protein ID:ENSP00000512541
Original member Current member NCBI NM_001366781.1 NP_001353710.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366781.1Link to Protein Sequence:NP_001353710.1Re-query CCDS DB by Nucleotide ID:NM_001366781Re-query CCDS DB by Protein ID:NP_001353710Link to BLAST:NP_001353710.1
Original member Current member NCBI NM_001366784.1 NP_001353713.1 Accepted alive Link to Nucleotide Sequence:NM_001366784.1Link to Protein Sequence:NP_001353713.1Re-query CCDS DB by Nucleotide ID:NM_001366784Re-query CCDS DB by Protein ID:NP_001353713Link to BLAST:NP_001353713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353710.1 644 Q9ULJ1-4 644 100% 0 0
NP_001353713.1 644 Q9ULJ1-4 644 100% 0 0

Chromosomal Locations for CCDS 90997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86348750 86348878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86352859 86352984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86354530 86354692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86354774 86354859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86356444 86356602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86358787 86358891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86360426 86360536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86371018 86371153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86372431 86372540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86376233 86376418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86382242 86382358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86382931 86383002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86383134 86383196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86384676 86384801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86385458 86385590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86386915 86387027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGGAGAAGGCTGTAAATGATGGAAGTCATTCAGAAGAACTCTTTTGCCATCTTAAAACTATATCAGAGA
AAGAAGATTTACCACGGTGTACCAGTGAAAGTCATCTCAGCTGCCTGAAGCAGGACATTCTAAATGAAAA
GACTGAATTGGAAGCAACACTTAAGGAAGCGGAGTTGGTAACTCATTCTGTAGAATTGCTTTTGCCACTA
TTTAAGGACACCATTGAAAAGATTAATTTTGAAAATGCGAATCTTTCTGCATTGAATTTGAAGATTTCTG
AACAGAAGGAAATATTAATAAAAGAATTAGACACCTTCAAAAGTGTAAAACTAGCTTTAGAACATCTTCT
TAGAAAGAGAGACTACAAACAAACAGGAGACAATTTATCCAGCATGTTGCTAGAAAATCTAACTGATAAT
GAAAGTGAAAATACTAATCTTAAGAAGAAGGTATTTGAAAAGGAGGCCCATATCCAAGAACTTTCTTGTT
TGTTTCAGAGTGAAAAGGCAAATACTTTGAAAGCAAACCGTTTTTCCCAATCAGTAAAAGTAGTACATGA
ACGACTACAGATCCAAATTCATAAAAGGGAAGCCGAGAACGATAAGTTGAAAGAATATGTAAAGAGCTTA
GAAACCAAGATAGCCAAGTGGAACCTGCAATCAAGAATGAATAAGAATGAGGCTATAGTGATGAAAGAAG
CAAGTAGGCAAAAAACTGTAGCTTTAAAAAAGGCATCTAAAGTTTACAAACAAAGGCTTGACCATTTTAC
AGGAGCTATTGAAAAGCTTACTTCCCAAATTAGAGATCAGGAAGCCAAGTTGTCTGAAACAATTTCAGCT
TCCAATGCCTGGAAAAGTCATTATGAGAAAATTGTGATAGAAAAAACCGAATTGGAAGTACAGATTGAAA
CAATGAAAAAGCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGACCATGGAAAAAATTCATG
TGAAGAAATTCTTAGAAAAGTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAA
TTAAAGACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAG
AAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAGGTACAAAAGTTGCAAGAAGCAGC
TGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAACAAAAACCAAAAATAAA
AATGTAGAGAAGATGAGAGGCCAGATGGAGTCTCATCTGAAGGAGTTAGAGCGTGTCTGCGATTCCTTGA
CGGCGGCGGAACGGAGGCTTCACGAGTGTCAGGAGAGTCTGCAGTGCTGCAAGGGGAAGTGTGCAGACCA
GGAACACACCATTAGGGAGCTTCAGGGCCAGGTTGATGGAAATCACAATCTTCTGACAAAGCTTTCTCTG
GAAGAGGAAAACTGTCTTATTCAGCTGAAGTGTGAAAACCTTCAACAAAAATTAGAACAGATGGACGCAG
AAAATAAAGAGCTTGAGAAGAAGCTGGCAAACCAAGAAGAATGTCTTAAGCACAGCAATCTTAAGTTTAA
AGAGAAATCTGCAGAGTATACAGCATTGGCCAGACAACTGGAAGCTGCTTTAGAAGAAGGAAGACAAAAG
GTTGCTGAAGAAATAGAGAAAATGTCATCTAGAGAGAGTGCTTTACAAATTAAAATATTAGATCTGGAAA
CTGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAACAGTAAAGCACAACATCA
GGAAGTGTGTTTGAAAGAAGTACAAAATAGTCTTGAGAAGTCGGAAAATCAAAATGAGAGTATTAAGAAT
TATTTACAGTTTCTTAAAACTTCTTATGTAACAATGTTTGAATAA

Translation (644 aa):
MEKAVNDGSHSEELFCHLKTISEKEDLPRCTSESHLSCLKQDILNEKTELEATLKEAELVTHSVELLLPL
FKDTIEKINFENANLSALNLKISEQKEILIKELDTFKSVKLALEHLLRKRDYKQTGDNLSSMLLENLTDN
ESENTNLKKKVFEKEAHIQELSCLFQSEKANTLKANRFSQSVKVVHERLQIQIHKREAENDKLKEYVKSL
ETKIAKWNLQSRMNKNEAIVMKEASRQKTVALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISA
SNAWKSHYEKIVIEKTELEVQIETMKKQIINLLEDLKKMEDHGKNSCEEILRKVHSIEYENETLNLENTK
LKTTLAALKDEVVSVENELSELQEVEKKQKTLIEMYKTQVQKLQEAAEIVKSRCENLLHKNNQITKTKNK
NVEKMRGQMESHLKELERVCDSLTAAERRLHECQESLQCCKGKCADQEHTIRELQGQVDGNHNLLTKLSL
EEENCLIQLKCENLQQKLEQMDAENKELEKKLANQEECLKHSNLKFKEKSAEYTALARQLEAALEEGRQK
VAEEIEKMSSRESALQIKILDLETELRKKNEEQNQLVCKMNSKAQHQEVCLKEVQNSLEKSENQNESIKN
YLQFLKTSYVTMFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH