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Report for CCDS90883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90883.1 Public Homo sapiens 1 SRRM1 24 110 108 CCDS HistoryNCBI Gene:10250Re-query CCDS DB by CCDS ID:90883.1Re-query CCDS DB by GeneID:10250See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000705682.1 ENSP00000516160.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000705682.1Link to Ensembl Protein Viewer:ENSP00000516160.1Re-query CCDS DB by Nucleotide ID:ENST00000705682Re-query CCDS DB by Protein ID:ENSP00000516160
Original member Current member NCBI NM_001366575.1 NP_001353504.1 Accepted alive Link to Nucleotide Sequence:NM_001366575.1Link to Protein Sequence:NP_001353504.1Re-query CCDS DB by Nucleotide ID:NM_001366575Re-query CCDS DB by Protein ID:NP_001353504Link to BLAST:NP_001353504.1

Chromosomal Locations for CCDS 90883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24643327 24643347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24645984 24646073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24646667 24646789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24648859 24649029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24649971 24650086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24651409 24651612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24652434 24652628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24652913 24653032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24654855 24655123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24660719 24660799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24661313 24661396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24662660 24662804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24663183 24663224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24666815 24666925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24669123 24669587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24670120 24670315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24671386 24671595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24672182 24672286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGGACGCGGGATTTTTCCGCGGAACAAGTGCAGAACAGGATAATCGGTTCAGCAACAAACAGAAGAAAC
TACTGAAGCAGCTGAAATTTGCAGAATGCCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGT
TATAAAGCCTTGGATAACAAAAAGAGTAACGGAAATCCTTGGGTTTGAAGATGATGTTGTGATTGAGTTT
ATATTCAACCAGCTGGAAGTGAAGAATCCAGACTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGA
ATGGAAAAAATGCTCGAGAATTTATGGGAGAACTGTGGCCCCTGCTGCTAAGTGCACAAGAAAACATCGC
GGGAATCCCTTCTGCTTTCCTAGAACTGAAGAAAGAAGAAATAAAACAAAGACAGATTGAACAAGAAAAA
CTGGCATCTATGAAAAAGCAAGATGAAGACAAAGATAAAAGAGATAAGGAAGAAAAAGAAAGCAGCAGAG
AAAAAAGGGAGCGGTCTCGTAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTC
CCCTGTCAGGAGAGAGAGAAAGCGCAGTCATTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGTCCT
TCCCCTGCTCCAGAAAAGAAGGAAAAAACTCCAGAGCTCCCAGAACCTTCAGTGAAAGTAAAAGAACCTT
CAGTACAAGAGGCTACTTCTACTAGTGACATTCTGAAAGTTCCCAAACCTGAACCTATACCAGAGCCTAA
AGAACCTTCTCCGGAAAAAAATTCCAAAAAAGAAAAGGAGAAGGAGAAGACCCGACCACGATCTCGGTCA
CGCTCCAAATCAAGATCCCGGACGCGGTCCCGCTCTCCTTCTCACACTCGACCTAGACGGCGCCATAGAT
CCCGATCAAGATCGTATTCACCTAGAAGGCGGCCAAGCCCAAGAAGGCGGCCATCTCCTCGAAGAAGAAC
TCCGCCAAGAAGAATGCCTCCTCCACCAAGGCATAGAAGGAGTAGATCTCCAGTAAGACGAAGAAGACGT
TCGTCAGCATCCTTGTCTGGGAGTAGCTCATCATCCTCTTCATCTCGTTCACGGTCACCACCAAAGAAGC
CTCCCAAGAGGACATCCAGCCCCCCTCGGAAAACTCGTAGGTTATCTCCTTCAGCAAGTCCTCCAAGGCG
AAGGCACAGGCCATCACCTCCTGCAACTCCACCACCCAAAACTCGGCATTCCCCTACACCCCAGCAGTCA
AACCGTACAAGAAAAAGTCGTGTTTCTGTGTCTCCAGGGAGAACTTCAGTGACAAAACATAAAGGTACTG
AGAAAAGAGAATCCCCTTCACCAGCACCGAAGCCTAGAAAAGTAGAGTTATCTGAATCGGAAGATAAAGG
TGGCAAAATGGCTGCAGCAGATTCTGTGCAGCAGAGACGCCAATACAGACGACAAAACCAGCAGTCTTCA
TCTGACTCTGGCTCCTCCTCCTCCTCAGAAGATGAACGACCCAAGAGATCCCATGTGAAGAATGGTGAGG
TTGGCAGGCGGCGGAGACATTCCCCTTCCCGGAGTGCTTCTCCATCACCACGAAAGCGCCAAAAAGAGAC
TTCCCCTCGGATGCAGATGGGAAAGCGATGGCAATCGCCAGTGACTAAAAGTGGTAGACGGAGGAGAAGT
CCATCCCCACCACCCACCAGAAGGCGACGGTCTCCTTCTCCCGCCCCTCCTCCTCGACGGCGCAGGACTC
CCACACCACCACCACGACGAAGGACTCCTTCTCCTCCCCCACGTCGGCGCTCACCTTCTCCTAGAAGATA
CTCTCCTCCAATACAGAGGAGATACTCTCCTTCTCCACCTCCAAAGAGAAGAACGGCTTCACCTCCTCCC
CCTCCTAAACGAAGAGCATCACCATCTCCACCACCAAAGCGGCGGGTCTCCCATTCTCCACCTCCCAAAC
AAAGAAGCTCCCCAGTCACCAAGAGACGTTCACCTTCATTATCATCCAAGCATAGGAAAGGGTCTTCCCC
AAGCCGCTCTACCCGGGAGGCCCGATCACCACAACCAAACAAACGGCATTCGCCCTCACCACGGCCTCGA
GCTCCTCAGACCTCCTCAAGTCCTCCACCCGTTCGAAGAGGAGCGTCGTCATCACCCCAAAGAAGGCAGT
CCCCGTCTCCAAGTACTAGGCCCATTAGGAGAGTCTCCAGGACTCCGGAACCTAAAAAGATAAAAAAGGC
TGCTTCCCCAAGCCCACAGTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGTCTCCTGAGCCA
GCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGTCACCGTCTACAAACTGGTCACCAG
CTGTACCGGTCAAAAAGGCCAAAAGCCCAACACCGAGCCCATCACCGCCAAGAAATTCAGATCAGGAAGG
AGGTGGAAAGAAAAAGAAGAAAAAGAAGGACAAGAAACACAAAAAGGATAAGAAGCACAAGAAGCACAAA
AAACACAAGAAGGAAAAGGCTGTGGCTGCAGCTGCTGCAGCTGCTGTGACCCCTGCAGCCATTGCAGCTG
CCACAACCACATTAGCACAGGAAGAGCCAGTGGCAGCGCCAGAGCCGAAGAAGGAGACTGAAAGTGAAGC
TGAAGATAACCTTGATGATTTAGAAAAGCACCTGCGTGAAAAGGCCCTGAGATCAATGAGGAAGGCCCAA
GTGTCCCCACAGTCTTAG

Translation (915 aa):
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEF
IFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEK
LASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSP
SPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRS
RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRR
SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS
NRTRKSRVSVSPGRTSVTKHKGTEKRESPSPAPKPRKVELSESEDKGGKMAAADSVQQRRQYRRQNQQSS
SDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSGRRRRS
PSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPP
PPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPR
APQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP
AAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHK
KHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEPKKETESEAEDNLDDLEKHLREKALRSMRKAQ
VSPQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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