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Report for CCDS13678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13678.1 Public Homo sapiens 21 ZBTB21 24 110 108 CCDS HistoryNCBI Gene:49854Re-query CCDS DB by CCDS ID:13678.1Re-query CCDS DB by GeneID:49854See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310826.10 ENSP00000308759.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310826.10Link to Ensembl Protein Viewer:ENSP00000308759.5Re-query CCDS DB by Nucleotide ID:ENST00000310826Re-query CCDS DB by Protein ID:ENSP00000308759
Original member Current member EBI ENST00000398499.5 ENSP00000381512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398499.5Link to Ensembl Protein Viewer:ENSP00000381512.1Re-query CCDS DB by Nucleotide ID:ENST00000398499Re-query CCDS DB by Protein ID:ENSP00000381512
Original member Current member EBI ENST00000398511.3 ENSP00000381523.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398511.3Link to Ensembl Protein Viewer:ENSP00000381523.3Re-query CCDS DB by Nucleotide ID:ENST00000398511Re-query CCDS DB by Protein ID:ENSP00000381523
Original member Current member NCBI NM_001098402.2 NP_001091872.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098402.2Link to Protein Sequence:NP_001091872.1Re-query CCDS DB by Nucleotide ID:NM_001098402Re-query CCDS DB by Protein ID:NP_001091872Link to BLAST:NP_001091872.1
Original member Current member NCBI NM_001320731.2 NP_001307660.1 Accepted alive Link to Nucleotide Sequence:NM_001320731.2Link to Protein Sequence:NP_001307660.1Re-query CCDS DB by Nucleotide ID:NM_001320731Re-query CCDS DB by Protein ID:NP_001307660Link to BLAST:NP_001307660.1
Original member Current member NCBI NM_020727.5 NP_065778.3 Accepted alive Link to Nucleotide Sequence:NM_020727.5Link to Protein Sequence:NP_065778.3Re-query CCDS DB by Nucleotide ID:NM_020727Re-query CCDS DB by Protein ID:NP_065778Link to BLAST:NP_065778.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091872.1 1066 Q9ULJ3-1 1066 100% 0 0
NP_001307660.1 1066 Q9ULJ3-1 1066 100% 0 0
NP_065778.3 1066 Q9ULJ3-1 1066 100% 0 0

Chromosomal Locations for CCDS 13678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41990895 41994095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3201 nt):
ATGGAGGGATTACTGCATTACATCAACCCTGCACACGCCATTTCTCTCCTAAGTGCCCTGAATGAGGAGC
GTCTCAAAGGACAGCTGTGTGATGTGCTGCTGATTGTTGGAGACCAAAAGTTCCGAGCTCATAAAAACGT
CTTGGCTGCCAGCAGCGAATACTTTCAGAGTTTATTCACAAATAAGGAAAATGAGTCACAAACTGTATTT
CAGCTTGACTTCTGTGAGCCAGATGCTTTTGATAATGTTTTAAACTACATTTATTCTTCCTCTCTATTTG
TTGAGAAGAGCAGCCTTGCTGCTGTGCAAGAACTTGGCTATAGTCTTGGGATTTCCTTTCTGACTAACAT
CGTTTCTAAAACACCTCAAGCCCCCTTTCCAACGTGTCCTAATAGAAAAAAAGTGTTTGTAGAAGATGAT
GAAAACAGTTCTCAAAAGAGAAGTGTCATTGTTTGTCAAAGTAGAAACGAAGCGCAAGGAAAAACTGTTA
GTCAAAATCAACCCGATGTAAGCCATACTTCCCGGCCCTCTCCTAGCATTGCAGTCAAGGCCAATACCAA
TAAGCCACATGTCCCAAAACCAATAGAACCACTTCATAATTTGTCATTAACTGAAAAGAGTTGGCCGAAA
GATAGTTCTGTGGTATATGCAAAGTCTCTTGAGCATTCTGGATCTTTGGATGATCCTAATAGAATCAGTT
TGGTGAAAAGAAATGCAGTGTTGCCTTCAAAGCCTCTGCAAGACAGAGAAGCTATGGATGATAAACCAGG
TGTGAGTGGTCAGCTTCCAAAAGGAAAAGCTCTAGAGCTGGCTTTGAAGAGACCACGGCCACCTGTTTTG
TCTGTTTGTAGCTCATCAGAGACTCCCTATCTATTAAAAGAAACTAACAAAGGAAATGGTCAAGGTGAAG
ATAGAAACTTGTTGTACTATTCAAAGTTAGGCTTAGTGATCCCATCCAGTGGATCTGGTTCTGGAAACCA
AAGCATTGACAGGAGTGGCCCACTTGTTAAGAGTCTCCTCAGACGGTCATTGTCGATGGATAGCCAGGTT
CCTGTCTATTCACCTTCCATAGATTTGAAATCTTCCCAGGGATCATCTTCGGTGTCCAGTGATGCACCAG
GGAATGTGTTGTGTGCTTTATCTCAGAAGTCATCTTTAAAAGATTGTAGTGAAAAAACAGCCCTAGATGA
CAGGCCTCAAGTGCTACAACCGCATCGCCTCAGGTCCTTTAGTGCTTCTCAGTCAACAGACAGGGAGGGA
GCTTCCCCTGTGACTGAGGTGCGCATAAAGACTGAGCCCAGCAGCCCGCTGTCGGACCCCTCGGACATCA
TCCGCGTCACTGTGGGAGATGCGGCAACAACAGCAGCTGCCTCATCTTCGTCGGTCACAAGAGACCTGTC
TCTGAAAACAGAAGATGACCAAAAAGACATGAGCAGACTCCCAGCAAAAAGGAGGTTCCAAGCGGACCGA
AGATTGCCGTTTAAGAAGTTAAAGGTGAATGAGCACGGGTCTCCTGTGTCAGAAGATAATTTTGAGGAAG
GCTCAAGCCCTACTCTCCTTGATGCAGATTTTCCAGATTCTGATTTGAATAAAGACGAATTTGGTGAGTT
GGAGGGGACGAGACCAAACAAAAAATTTAAATGCAAACATTGCCTTAAGATCTTTAGATCAACAGCAGGT
CTTCACCGTCATGTTAACATGTACCATAACCCAGAAAAGCCCTACGCTTGTGACATCTGTCACAAGAGGT
TTCACACCAACTTCAAAGTGTGGACACACTGTCAGACCCAACACGGCATAGTGAAGAACCCATCACCAGC
CTCTAGTTCACATGCTGTTTTGGATGAAAAATTCCAAAGAAAGCTGATTGACATAGTGAGAGAGAGAGAA
ATTAAGAAGGCCCTGATCATTAAGTTAAGGCGCGGCAAGCCTGGTTTTCAGGGACAGAGTAGCTCCCAAG
CACAGCAAGTCATCAAGAGGAACTTGAGATCTCGAGCCAAAGGAGCTTACATTTGTACTTACTGCGGAAA
AGCGTACCGCTTTCTCTCTCAATTTAAGCAGCATATAAAAATGCATCCAGGAGAAAAACCCCTTGGAGTA
AATAAAGTTGCTAAACCAAAAGAGCATGCTCCTCTTGCAAGTCCAGTAGAAAACAAGGAGGTTTACCAGT
GCCGCCTCTGTAATGCTAAGCTCTCTTCTCTCCTAGAGCAAGGAAGCCACGAGCGGCTGTGCCGGAACGC
GGCCGTCTGCCCTTACTGCAGCCTCAGGTTTTTCTCGCCCGAGCTGAAGCAAGAACACGAGAGCAAGTGT
GAGTATAAGAAGCTGACCTGCCTCGAGTGCATGCGCACCTTCAAGTCCTCTTTCAGCATCTGGCGGCACC
AGGTTGAAGTCCATAATCAGAACAACATGGCACCCACCGAAAACTTTTCTTTGCCCGTTTTGGACCACAA
TGGTGATGTGACTGGTTCTTCAAGGCCCCAATCCCAGCCTGAGCCCAACAAAGTAAACCACATCGTCACC
ACAAAAGACGACAACGTGTTCAGTGATTCTTCAGAACAAGTTAACTTCGACTCGGAAGATTCCTCTTGTC
TTCCCGAAGACCTTAGTCTTTCCAAGCAACTGAAAATCCAAGTCAAAGAGGAGCCTGTGGAGGAGGCTGA
AGAAGAGGCACCCGAGGCCAGCACAGCCCCCAAAGAAGCGGGTCCTAGCAAAGAAGCCAGCCTGTGGCCC
TGCGAGAAGTGTGGGAAGATGTTCACGGTGCATAAGCAGCTGGAGCGTCACCAGGAGCTTCTGTGCTCTG
TGAAACCATTTATTTGTCACGTGTGCAACAAAGCTTTTCGCACTAATTTTCGACTCTGGAGTCACTTCCA
ATCGCACATGTCTCAGGCTTCAGAGGAATCGGCACATAAGGAATCTGAGGTGTGCCCTGTTCCCACAAAC
TCTCCCTCTCCACCACCTCTGCCACCGCCACCACCACTGCCCAAGATCCAGCCTCTGGAGCCTGACAGCC
CCACAGGCCTGTCCGAAAACCCAACTCCAGCCACAGAAAAACTGTTTGTGCCCCAAGAATCAGACACCCT
TTTTTACCATGCCCCACCCCTTTCAGCAATCACATTTAAAAGACAGTTTATGTGTAAACTTTGCCACAGG
ACATTCAAGACTGCATTTAGTCTTTGGAGTCACGAACAAACACACAATTGA

Translation (1066 aa):
MEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENESQTVF
QLDFCEPDAFDNVLNYIYSSSLFVEKSSLAAVQELGYSLGISFLTNIVSKTPQAPFPTCPNRKKVFVEDD
ENSSQKRSVIVCQSRNEAQGKTVSQNQPDVSHTSRPSPSIAVKANTNKPHVPKPIEPLHNLSLTEKSWPK
DSSVVYAKSLEHSGSLDDPNRISLVKRNAVLPSKPLQDREAMDDKPGVSGQLPKGKALELALKRPRPPVL
SVCSSSETPYLLKETNKGNGQGEDRNLLYYSKLGLVIPSSGSGSGNQSIDRSGPLVKSLLRRSLSMDSQV
PVYSPSIDLKSSQGSSSVSSDAPGNVLCALSQKSSLKDCSEKTALDDRPQVLQPHRLRSFSASQSTDREG
ASPVTEVRIKTEPSSPLSDPSDIIRVTVGDAATTAAASSSSVTRDLSLKTEDDQKDMSRLPAKRRFQADR
RLPFKKLKVNEHGSPVSEDNFEEGSSPTLLDADFPDSDLNKDEFGELEGTRPNKKFKCKHCLKIFRSTAG
LHRHVNMYHNPEKPYACDICHKRFHTNFKVWTHCQTQHGIVKNPSPASSSHAVLDEKFQRKLIDIVRERE
IKKALIIKLRRGKPGFQGQSSSQAQQVIKRNLRSRAKGAYICTYCGKAYRFLSQFKQHIKMHPGEKPLGV
NKVAKPKEHAPLASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKC
EYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTENFSLPVLDHNGDVTGSSRPQSQPEPNKVNHIVT
TKDDNVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKIQVKEEPVEEAEEEAPEASTAPKEAGPSKEASLWP
CEKCGKMFTVHKQLERHQELLCSVKPFICHVCNKAFRTNFRLWSHFQSHMSQASEESAHKESEVCPVPTN
SPSPPPLPPPPPLPKIQPLEPDSPTGLSENPTPATEKLFVPQESDTLFYHAPPLSAITFKRQFMCKLCHR
TFKTAFSLWSHEQTHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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