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Report for CCDS24997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24997.1 Public Mus musculus 11 Haspin 23 108 98 CCDS HistoryNCBI Gene:14841Re-query CCDS DB by CCDS ID:24997.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052140.2 ENSMUSP00000055806.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052140.2Link to Ensembl Protein Viewer:ENSMUSP00000055806.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052140Re-query CCDS DB by Protein ID:ENSMUSP00000055806
Original member Current member NCBI NM_010353.2 NP_034483.1 Accepted alive Link to Nucleotide Sequence:NM_010353.2Link to Protein Sequence:NP_034483.1Re-query CCDS DB by Nucleotide ID:NM_010353Re-query CCDS DB by Protein ID:NP_034483Link to BLAST:NP_034483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034483.1 754 Q9Z0R0 754 99.8674% 0 1

Chromosomal Locations for CCDS 24997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73135997 73138261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGGCACAGGCTCACCCGCGGTCGGGTACCCGGCTCTTTCGAACGTACGCGGCGAGGGGCGTCCGGGGGT
CGCAGCGGCAGCCTGGCGGGCTGGCTGAGCAATGGTTCCAGCCGCCGAACCTGAAGCGCGCCTTCAGCAG
CAGCCTCAGCGACAGTAACGAGTCGCCGGCTGTCGCTTCCGACGACCCGGACGACCCCGACTTCCCCGGC
AGCCTCGTGGGCCAGCGGCGGAGGCGTCCTCGGGGCAGCGGCTCCCGGAACCAGCGGACCCTGACAAACA
CTCCAAGAGTCCAAAGGCTGCGACCTCGGCTCCCGCAGAAGTGCAGCACCCCGTGCAGCCGGCTGCGACC
GCCACCTTTCCCCAACTGCAGCCCGGGCTGCCTCGGGTCGGACCACAGTGTGTGCATCCAGTCCAGGGAC
AGCAACGAGCTGGGCACCAGTGCCTCCCTCTTCAGCTCTCCGGCCTCGCCCGGAGCCCCCGACCCTTTGT
ATGCTGACTCTGCAGTCCCCGGGAGCTTCCACTTGCCGGCAGCCTCCCTAAGTGAACCGTCTGTGCCCTG
CCCCCAGGTGGCAGCAACCGGTGACAGGTACACCGGGAGGGCCCTCCGAGCCGAAGCCAGCTTCAGGTCA
TCTCTCTTTAGCCTTGTGAACTCAGGGGCCACAGAAGAGAACAAGTTTGGGACAGATGGGGAGAATGTGA
AGGAATCGTGTTGTGAAAGAAGACAGCAGATGGGAAACAGACTAACGGACCCTGATCTGACAAGCCCGGG
AAAGAGAAAGGCCGCGTGTAAAAAGGTTGTGTCCCAAGGAGTCGACCAGAGAGACTATGAGGAGTCCAGT
GCTTGCAAAGACCTTCGTGTACCAGGGGAAATCAGCAGGCCTAAGAGAACTGGGCCACTCCGGAAGAGGA
AACAGCAAGAAGCAACGGGAACCCCTCCCCGCCACTACCACCAATCTAAGAAGAAAAGGAAAGCGTCAGT
CTCCTTATGGAACTTGAATACTAGCCAGAGGGATTCTTGGACCAAAACCAGAGCCTCCTTCGGTTTCCAC
AAGAAGAAAATTATAACCAGTGTGATAGAGGTATGCAGTTCTGTTGCCAGTTCTTCCTCCAGGTCCCTCC
TGTCTGAATGTTCGACCCCTCCTATCAAGAACAGAGCACACCTTACTGTTTCTTCTCGATGCTCTTCTGT
GTATTTGCTAAGTCCCTTAAAGACCCTGCATGTCACAGACCAAAGGCCATCTTATGCTGAAAAGGTTTAT
GGGGAGTGTAATCAGGAAGGGCCCATCCCCTTTAGTGATTGCCTTTCCACGGAAAAACTGGAACGGTGTG
AGAAGATTGGGGAAGGAGTGTTTGGAGAAGTGTTTCAGATAATTAACGACCAAGCACCTGTAGCCCTAAA
AATCATTGCTATTGAAGGGTTAGATTTAGTCAATGGGTCCCACCAGAAAACCTTTGAGGAAATCCTGCCG
GAGATCATTATCTCCAAAGAGCTGAGTCTCTTGTCTAGTGAGGCCTACAACCGCACAGAAGGCTTTATTG
GGCTGAACTCAGTACACTGTGTTCAAGGGCTTTACCCTCCCTTGCTGCTGAAAGCCTGGGATCACTATAA
CACAACCAAAAGATCTGCCAATGACCGGCCTGACTTTTTCCAGGAAGACCAGCTCTTTATTATCCTGGAA
TTTGAGTTTGGTGGGGTTGACTTGGAGCGAATGAAAACCAAGCTGTCCTCTGTGGCGACTGCAAAGAGCA
TTCTCCACCAGATCACTGCATCTCTGGCTGTGGCAGAAGCATCCCTGCACTTTGAGCACCGGGACTTACA
CTGGGGAAATGTGCTCTTAAAGAAAACCAACCTCAAAGAACTCCGCTACACCCTCAATGGGAAAACGAGC
ACCATTCCCACCCATGGGCTACAGGTCAACATCATTGACTACACCCTGTCCCGCTTGGAGCGGGATGGGA
TTGTGGTTTTCTGTGATATCTCCGCTGAAGAGGACCTATTTACAGGTGAGGGTGACTACCAGTTTGAGAT
CTACAGGCTCATGAGGAAGGAGAACAAAAACTGCTGGGGTGAGTATCACCCTTACAATAATGTGCTGTGG
CTGCATTACCTCACAGACAAGATTCTGAATAAGATGAAATTTAAGACTAAATGCCAGAGCGCAGCCATGA
AGCAAATAAGGAAAAACCTGCAACATTTCCACAGGACTGTACTGAGTTTCAGCTCTGCCACGGACCTGCT
CTGCCAACACAGTCTATTTAGGTAA

Translation (754 aa):
MAQAHPRSGTRLFRTYAARGVRGSQRQPGGLAEQWFQPPNLKRAFSSSLSDSNESPAVASDDPDDPDFPG
SLVGQRRRRPRGSGSRNQRTLTNTPRVQRLRPRLPQKCSTPCSRLRPPPFPNCSPGCLGSDHSVCIQSRD
SNELGTSASLFSSPASPGAPDPLYADSAVPGSFHLPAASLSEPSVPCPQVAATGDRYTGRALRAEASFRS
SLFSLVNSGATEENKFGTDGENVKESCCERRQQMGNRLTDPDLTSPGKRKAACKKVVSQGVDQRDYEESS
ACKDLRVPGEISRPKRTGPLRKRKQQEATGTPPRHYHQSKKKRKASVSLWNLNTSQRDSWTKTRASFGFH
KKKIITSVIEVCSSVASSSSRSLLSECSTPPIKNRAHLTVSSRCSSVYLLSPLKTLHVTDQRPSYAEKVY
GECNQEGPIPFSDCLSTEKLERCEKIGEGVFGEVFQIINDQAPVALKIIAIEGLDLVNGSHQKTFEEILP
EIIISKELSLLSSEAYNRTEGFIGLNSVHCVQGLYPPLLLKAWDHYNTTKRSANDRPDFFQEDQLFIILE
FEFGGVDLERMKTKLSSVATAKSILHQITASLAVAEASLHFEHRDLHWGNVLLKKTNLKELRYTLNGKTS
TIPTHGLQVNIIDYTLSRLERDGIVVFCDISAEEDLFTGEGDYQFEIYRLMRKENKNCWGEYHPYNNVLW
LHYLTDKILNKMKFKTKCQSAAMKQIRKNLQHFHRTVLSFSSATDLLCQHSLFR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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