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Report for CCDS53267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53267.1 Public Homo sapiens 1 C1orf127 24 110 108 CCDS HistoryNCBI Gene:148345Re-query CCDS DB by CCDS ID:53267.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377004.9 ENSP00000366203.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377004.9Link to Ensembl Protein Viewer:ENSP00000366203.4Re-query CCDS DB by Nucleotide ID:ENST00000377004Re-query CCDS DB by Protein ID:ENSP00000366203
Original member Current member NCBI NM_001170754.2 NP_001164225.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170754.2Link to Protein Sequence:NP_001164225.1Re-query CCDS DB by Nucleotide ID:NM_001170754Re-query CCDS DB by Protein ID:NP_001164225Link to BLAST:NP_001164225.1

Chromosomal Locations for CCDS 53267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 10947663 10948844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10949624 10949814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10954019 10954142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10954990 10955186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10957023 10957107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10957616 10957753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10958714 10958752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10964128 10964271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10966358 10966482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10969970 10970089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10976156 10976256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10982012 10982037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGTGGGGGTCCCCAGCACTTGCCTGGGCCGTCTGGCTTGCCTGTGTTCAGCCCACGGTGTTCCCATGGA
GCCTCTCCTTCAGGTCAGACACGGACAAGCCAAGCTCTGCAGCAGAAGTTTTAACAGAAGCATCTTCTTG
TTGGACAGACACAGTTGAGTGCTTCTCAGACTACATGACCCTGTGGATCCCAAGGAGCCACGTGGAGGGG
CTGAGGCGGTGGCTGGCCAGGACCTTGCACTTGCCAGGCACCTGGAGGTCCCCTGACCACCTGGATTCTT
CTCTTGCTAAATGTGGCTACTTCCTGCATCTGGCTTCAGACGGTGACTTCCTTTTTCGAGTTCAATACTC
GGCCTGCTTTGTGCAGAAAGAGAAAGCAAATTACAGGCTGGAAATCAGAATATTTCAGAAAGGGGTGATG
GGGTTGGAGCGGAGTGATCGCTACATAATGAAGTGTCCGATGCTAAGGTCAAGGCTGGGCCAGGAAAGCG
TCCACTGTGGGCCCATGTTCATCCAGGTCTCCCGGCCCCTGCCCCTGTGGAGGGACAATAGACAGACTCC
ATGGCTGCTGTCCCTTCGAGGGGAGCTGGTGGCTTCTCTTGAAGACGCCAGCCTGATGGGACTGTATGTG
GACATGAATGCCACCACTGTCACCGTCCAAAGCCCGAGACAAGGCCTTCTTCAGAGGTGGGAGGTGCTGA
ACACCTCTGCTGAGCTCCTGCCACTATGGCTGGTGAGCGGTCACCATGCCTATTCTTTAGAAGCTGCTTG
CCCACCGGTGTCATTCCAGCCAGAGTCGGAGGTCTTAGTTCACATCCCCAAGCAGAGACTGGGTCTAGTC
AAAAGAGGTTCCTACATTGAGGAAACCCTGAGCCTCAGATTCCTCCGAGTCCACCAGTCCAACATCTTTA
TGGTGACTGAGAACAAGGACTTTGTGGTGGTCAGCATTCCGGCGGCCGGGGTGCTCCAGGTCCAGCGATG
CCAAGAAGTCGGAGGAACCCCGGGAACACAAGCTTTCTATAGGGTAGACCTGAGCCTGGAATTTGCCGAG
ATGGCTGCCCCGGTCCTCTGGACAGTGGAGAGCTTCTTCCAGTGTGTGGGTTCAGGAACAGAGTCGCCTG
CCTCAACTGCTGCACTGAGGACCACTCCCTCCCCACCATCCCCAGGACCAGAGACCCCTCCAGCGGGAGT
GCCACCTGCTGCTTCCTCCCAGGTGTGGGCTGCAGGACCAGCTGCCCAGGAATGGCTTTCTCGGGACCTC
CTGCACCGGCCTTCCGACGCACTGGCCAAAAAGGGGCTTGGACCATTCCTGCAAACAGCCAAACCGGCGA
GAAGAGGCCAGACATCTGCCTCCATTCTCCCCAGAGTGGTGCAAGCTCAGCGAGGTCCCCAGCCTCCCCC
AGGGGAAGCAGGGATCCCTGGACACCCCACACCTCCAGCCACGCTCCCCTCGGAGCCTGTAGAGGGTGTC
CAGGCTAGTCCCTGGCGGCCACGTCCAGTCTTGCCAACGCACCCGGCTCTGACCCTGCCCGTGTCCTCAG
ATGCCTCCTCTCCTTCACCGCCAGCCCCGAGGCCTGAACGACCTGAATCACTTCTGGTCTCAGGACCATC
TGTCACCCTGACTGAAGGTCTAGGAACTGTGAGGCCTGAACAGGACCCCGCCAAGTCTCCAGGAAGTCCC
CTCCTGCTGAGAGGCTTGTCAAGCGGGGATGTGGCTGCACCTGAGCCCATCATGGGGGAGCCCGGCCAAG
CCAGTGAGGAGTTCCAGCCATTGGCGAGGCCCTGGCGGGCCACACTGGCTGCAGAGGAGCTGGTTTCTCA
CCGTTCTCCCGGAGAGCCCCAGGAAACGTGCTCTGGAACGGAGGTGGAGAGGCCACGCCAGACAGGGCCT
GGTCTCCCCAGGGAGGGGGCCAGGGGGCACATGGACCTTTCATCCTCAGAACCAAGCCAGGACATAGAGG
GGCCGGGACTCTCCATCCTGCCAGCGAGGGATGCCACATTCTCCACCCCAAGTGTGAGGCAGCCAGACCC
CAGTGCCTGGCTGAGTTCAGGACCTGAACTCACCGGGATGCCCAGGGTGAGGCTGGCAGCGCCCCTGGCA
GTTCTTCCTATGGAACCTCTGCCACCAGAACCTGTTCGCCCAGCAGCTCTTCTGACACCCGAAGCCTCAT
CTGTGGGAGGGCCAGACCAGGCCCGATACCTGGAGTCAGCCCCTGGCTGGCCTGTGGGCCAGGAGGAGTG
GGGGGTTGCACACACGTCCAGCCCTCCATCCACGCAAACCCTGAGCCTGTGGGCTCCCACAGGAGTGTTG
CTACCCAGCCTGGTGGAGCTTGAATACCCCTTCCAGGCTGGCCGGGGGGCCTCACTCCAGCAGGAGCTGA
CAGAGCCCACCTTGGCCCTCAGTGCTGAAAGCCACAGGCCTCCTGAGCTTCAAGACAGTGTGGAGGGGCT
TTCTGAGAGGCCCTCACGCTGA

Translation (823 aa):
MWGSPALAWAVWLACVQPTVFPWSLSFRSDTDKPSSAAEVLTEASSCWTDTVECFSDYMTLWIPRSHVEG
LRRWLARTLHLPGTWRSPDHLDSSLAKCGYFLHLASDGDFLFRVQYSACFVQKEKANYRLEIRIFQKGVM
GLERSDRYIMKCPMLRSRLGQESVHCGPMFIQVSRPLPLWRDNRQTPWLLSLRGELVASLEDASLMGLYV
DMNATTVTVQSPRQGLLQRWEVLNTSAELLPLWLVSGHHAYSLEAACPPVSFQPESEVLVHIPKQRLGLV
KRGSYIEETLSLRFLRVHQSNIFMVTENKDFVVVSIPAAGVLQVQRCQEVGGTPGTQAFYRVDLSLEFAE
MAAPVLWTVESFFQCVGSGTESPASTAALRTTPSPPSPGPETPPAGVPPAASSQVWAAGPAAQEWLSRDL
LHRPSDALAKKGLGPFLQTAKPARRGQTSASILPRVVQAQRGPQPPPGEAGIPGHPTPPATLPSEPVEGV
QASPWRPRPVLPTHPALTLPVSSDASSPSPPAPRPERPESLLVSGPSVTLTEGLGTVRPEQDPAKSPGSP
LLLRGLSSGDVAAPEPIMGEPGQASEEFQPLARPWRATLAAEELVSHRSPGEPQETCSGTEVERPRQTGP
GLPREGARGHMDLSSSEPSQDIEGPGLSILPARDATFSTPSVRQPDPSAWLSSGPELTGMPRVRLAAPLA
VLPMEPLPPEPVRPAALLTPEASSVGGPDQARYLESAPGWPVGQEEWGVAHTSSPPSTQTLSLWAPTGVL
LPSLVELEYPFQAGRGASLQQELTEPTLALSAESHRPPELQDSVEGLSERPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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