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Report for CCDS15950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15950.1 Public Mus musculus 2 Hspa5 23 108 98 CCDS HistoryNCBI Gene:14828Re-query CCDS DB by CCDS ID:15950.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028222.12 ENSMUSP00000028222.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028222.12Link to Ensembl Protein Viewer:ENSMUSP00000028222.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028222Re-query CCDS DB by Protein ID:ENSMUSP00000028222
Original member Current member EBI ENSMUST00000100171.2 ENSMUSP00000097747.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100171.2Link to Ensembl Protein Viewer:ENSMUSP00000097747.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100171Re-query CCDS DB by Protein ID:ENSMUSP00000097747
Original member Current member NCBI NM_001163434.1 NP_001156906.1 Accepted alive Link to Nucleotide Sequence:NM_001163434.1Link to Protein Sequence:NP_001156906.1Re-query CCDS DB by Nucleotide ID:NM_001163434Re-query CCDS DB by Protein ID:NP_001156906Link to BLAST:NP_001156906.1
Original member Current member NCBI NM_022310.3 NP_071705.3 Accepted alive Link to Nucleotide Sequence:NM_022310.3Link to Protein Sequence:NP_071705.3Re-query CCDS DB by Nucleotide ID:NM_022310Re-query CCDS DB by Protein ID:NP_071705Link to BLAST:NP_071705.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156906.1 655 P20029 655 100% 0 0
NP_071705.3 655 P20029 655 100% 0 0

Chromosomal Locations for CCDS 15950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34772322 34772446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34772559 34772790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34773170 34773307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34773821 34773933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34774028 34774418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34774535 34774772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34775066 34775233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34775551 34776113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGATGAAGTTCACTGTGGTGGCGGCGGCGTTGCTGCTGCTGGGCGCGGTGCGGGCCGAGGAGGAGGACA
AGAAGGAGGATGTGGGCACGGTGGTCGGCATCGACTTGGGGACCACCTATTCCTGCGTCGGTGTGTTCAA
GAACGGCCGCGTGGAGATCATAGCCAACGATCAGGGCAACCGCATCACGCCGTCGTATGTGGCCTTCACT
CCTGAAGGGGAGCGTCTGATTGGCGATGCGGCCAAGAACCAACTCACGTCCAACCCCGAGAACACGGTCT
TCGATGCCAAGCGCCTCATCGGACGCACTTGGAATGACCCTTCGGTGCAGCAGGACATCAAGTTCTTGCC
ATTCAAGGTGGTTGAAAAGAAAACTAAACCGTACATTCAAGTTGATATTGGAGGTGGGCAAACCAAGACA
TTTGCCCCAGAAGAAATTTCTGCCATGGTTCTCACTAAAATGAAGGAGACTGCTGAGGCGTATTTGGGAA
AGAAGGTTACCCATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAGCGACAAGCAACCAAAGA
TGCTGGCACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCCTACAGCAGCTGCTATTGCATAT
GGCCTGGATAAGAGAGAGGGAGAGAAGAACATCCTTGTGTTTGACCTGGGTGGCGGCACCTTCGATGTGT
CTCTTCTCACCATTGACAATGGTGTCTTTGAAGTGGTGGCCACTAATGGAGATACTCACCTGGGTGGGGA
AGACTTTGATCAGCGGGTCATGGAACACTTCATCAAGTTGTACAAAAAGAAAACTGGTAAAGATGTTAGG
AAAGACAACAGAGCTGTGCAGAAACTCCGGCGTGAGGTAGAAAAGGCTAAGAGAGCCTTGTCTTCTCAGC
ATCAAGCAAGGATTGAAATTGAGTCCTTCTTCGAAGGAGAAGACTTCTCAGAGACCCTTACTCGGGCCAA
ATTTGAAGAGCTGAACATGGACCTGTTCCGCTCTACCATGAAGCCTGTCCAGAAAGTGTTGGAAGACTCT
GATCTGAAGAAATCTGATATTGATGAAATTGTTCTGGTTGGTGGATCTACTCGAATTCCAAAGATTCAGC
AACTGGTGAAAGAGTTCTTCAATGGCAAGGAGCCATCCCGTGGCATAAACCCCGATGAGGCTGTAGCCTA
TGGTGCCGCTGTCCAGGCTGGTGTCCTCTCTGGTGATCAGGATACAGGTGATCTGGTACTGCTTGATGTT
TGTCCCCTTACACTTGGTATTGAAACTGTGGGAGGAGTCATGACAAAACTGATTCCAAGGAACACTGTGG
TACCCACCAAGAAGTCTCAGATCTTCTCCACGGCTTCCGATAATCAGCCAACTGTAACAATCAAGGTCTA
TGAAGGTGAACGACCCCTAACAAAAGACAATCATCTTCTGGGTACATTTGATCTGACTGGAATTCCTCCT
GCTCCCCGTGGAGTTCCCCAGATTGAAGTCACTTTTGAGATAGATGTTAATGGTATTCTCCGAGTGACAG
CTGAAGACAAAGGTACAGGAAACAAAAACAAAATCACAATTACCAATGACCAAAACCGCCTGACACCTGA
AGAAATTGAAAGGATGGTTAATGATGCTGAGAAGTTTGCTGAGGAAGACAAAAAGCTCAAAGAGCGCATT
GACACCAGGAATGAATTGGAAAGCTATGCTTATTCTCTCAAGAACCAGATTGGAGATAAAGAAAAGCTGG
GAGGTAAACTTTCTTCTGAAGATAAAGAAACCATGGAAAAAGCTGTAGAGGAAAAGATTGAATGGCTGGA
AAGCCACCAGGATGCGGACATTGAAGACTTTAAAGCCAAAAAGAAGGAACTAGAAGAAATTGTTCAGCCA
ATTATCAGCAAACTCTATGGAAGTGGAGGCCCTCCCCCAACTGGTGAAGAGGATACATCAGAAAAAGATG
AGTTGTAG

Translation (655 aa):
MMKFTVVAAALLLLGAVRAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT
PEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKT
FAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAY
GLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVR
KDNRAVQKLRREVEKAKRALSSQHQARIEIESFFEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDS
DLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDV
CPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPP
APRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERI
DTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQP
IISKLYGSGGPPPTGEEDTSEKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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