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Report for CCDS94190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94190.1 Public Homo sapiens 7 PAX4 24 110 108 CCDS HistoryNCBI Gene:5078Re-query CCDS DB by CCDS ID:94190.1Re-query CCDS DB by GeneID:5078See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378740.6 ENSP00000368014.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378740.6Link to Ensembl Protein Viewer:ENSP00000368014.4Re-query CCDS DB by Nucleotide ID:ENST00000378740Re-query CCDS DB by Protein ID:ENSP00000368014
Original member Current member NCBI NM_001366111.1 NP_001353040.1 Accepted alive Link to Nucleotide Sequence:NM_001366111.1Link to Protein Sequence:NP_001353040.1Re-query CCDS DB by Nucleotide ID:NM_001366111Re-query CCDS DB by Protein ID:NP_001353040Link to BLAST:NP_001353040.1

Chromosomal Locations for CCDS 94190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127610852 127610985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127611535 127611676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127611945 127612000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127613022 127613091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127613450 127613532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127613756 127613881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127614482 127614557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127614880 127615095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127615401 127615531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127615916 127615928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCATCAGGACGGGATCAGCAGCATGAACCAGCTTGGGGGGCTCTTTGTGAATGGCCGGCCCCTGCCTC
TGGATACCCGGCAGCAGATTGTGCGGCTAGCAGTCAGTGGAATGCGGCCCTGTGACATCTCACGGATCCT
TAAGGTATCTAATGGCTGTGTGAGCAAGATCCTAGGGCGTTACTACCGCACAGGTGTCTTGGAGCCAAAG
GGCATTGGGGGAAGCAAGCCACGGCTGGCTACACCCCCTGTGGTGGCTCGAATTGCCCAGCTGAAGGGTG
AGTGTCCAGCCCTCTTTGCCTGGGAAATCCAACGCCAGCTTTGTGCTGAAGGGCTTTGCACCCAGGACAA
GACTCCCAGTGTCTCCTCCATCAACCGAGTCCTGCGGGCATTACAGGAGGACCAGGGACTACCGTGCACA
CGGCTCAGGTCACCAGCTGTTTTGGCTCCAGCTGTCCTCACTCCCCATAGTGGCTCTGAGACTCCCCGGG
GTACCCACCCAGGGACCGGCCACCGGAATCGGACTATCTTCTCCCCAAGCCAAGCAGAGGCACTGGAGAA
AGAGTTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGAAAGCTGGCTACTGCCACCTCTCTGCCT
GAGGACACGGTGAGGGTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAAGAGAAGCTCAAGTGGG
AAATGCAGCTGCCAGGTGCTTCCCAGGGGCTGACTGTACCAAGGGTTGCCCCAGGAATCATCTCTGCACA
GCAGTCCCCTGGCAGTGTGCCCACAGCAGCCCTGCCTGCCCTGGAACCACTGGGTCCCTCCTGCTATCAG
CTGTGCTGGGCAACAGCACCAGAAAGGTGTCTGAGTGACACCCCACCTAAAGCCTGTCTCAAGCCCTGCT
GGGACTGTGGCTCCTTCCTCCTTCCTGTGATTGCTCCCTCCTGTGTGGACGTTGCCTGGCCCTGCCTCGA
TGCCTCTCTGGCGCATCACCTGATTGGAGGGGCTGGTAAAGCAACACCCACCCACTTCTCACACTAG

Translation (348 aa):
MHQDGISSMNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEPK
GIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLRALQEDQGLPCT
RLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLP
EDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSCYQ
LCWATAPERCLSDTPPKACLKPCWDCGSFLLPVIAPSCVDVAWPCLDASLAHHLIGGAGKATPTHFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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