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Report for CCDS16245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16245.1 Public Mus musculus 2 Or8k1 23 108 98 CCDS HistoryNCBI Gene:258575Re-query CCDS DB by CCDS ID:16245.1Re-query CCDS DB by GeneID:258575See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099902.1 ENSMUSP00000097486.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099902.1Link to Ensembl Protein Viewer:ENSMUSP00000097486.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099902Re-query CCDS DB by Protein ID:ENSMUSP00000097486
Original member Current member EBI ENSMUST00000213987.2 ENSMUSP00000148873.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213987.2Link to Ensembl Protein Viewer:ENSMUSP00000148873.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213987Re-query CCDS DB by Protein ID:ENSMUSP00000148873
Original member Current member NCBI NM_146582.2 NP_666793.2 Accepted alive Link to Nucleotide Sequence:NM_146582.2Link to Protein Sequence:NP_666793.2Re-query CCDS DB by Nucleotide ID:NM_146582Re-query CCDS DB by Protein ID:NP_666793Link to BLAST:NP_666793.2

Chromosomal Locations for CCDS 16245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86216758 86217708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGAGAAATCCAACCACAGTGCGAGGATCCAGGTCACTGAATTTATTCTCTTGGGACTCACCAACAACC
CAGGCCTCAAAGCACCACTCTTTGTAATATTTTTAATCATATATTTGGTAACACTGATGGGCAATCTGGG
CATGGTTATCCTGACTCATGTAGACTCGAAACTACATACTCCTATGTACTTTTTCCTGAGACATTTATCA
ATCACGGATCTTGGCTACTCTACAGTTATAGGTCCAAAAATGATGGTAAACTTTGTAATGCAGCAGAATA
TCATTTCCTACACAGGGTGTGCTGTGCAACTGACATTCTTTGAGATTTTCATCATTACTGAACTGTTTAT
CCTCTCAGCCATGGCTTATGACCGCTATGTAGCCATCTGCAAACCTCTTCTCTATGTGATCATCATGGCA
GGAAAAGTACGTTGGGGGCTGGTACTGGTACCCTATCTCTATAGCCTATTTGTGTCCTTACTTCTCACAG
TTAAGTTATTCACACTGTCCTTTTGTGGCTCTAACATCATTAGTTACTTTTATTGTGACTGTGTCCCTCT
GATATCTCTGCTCTGTTCTGACACACATGAATTAGAACTGATTATTTTAATTTTCTCAGGCTGCAATTTA
CTCTCTTCCCTCCTCATTGTGCTGGTGTCTTACATGTTCATTTTTGTGGCAATTCTCAGGATGAACTCCA
AGGAGGGGAGGTCCAAAGCCTTCTCCACGTGCAGCTCTCATCTGACAGTAGTGGTTGTGTTCTATGGAAC
ACTGCTGTTTATTTACCTGCAACCCAAATCTAGTCATACTTTTGAAATTGATAAAATGGCCTCTGTGTTT
TATACACTAGTCATTCCTATGCTCAATCCATTGATATACAGCCTAAGAAACAAAGAAGTAAAGGAGGCCC
TTAAGAGAACTCTTACTCAGGGACTCAGAATCCACACTTAA

Translation (316 aa):
MEKSNHSARIQVTEFILLGLTNNPGLKAPLFVIFLIIYLVTLMGNLGMVILTHVDSKLHTPMYFFLRHLS
ITDLGYSTVIGPKMMVNFVMQQNIISYTGCAVQLTFFEIFIITELFILSAMAYDRYVAICKPLLYVIIMA
GKVRWGLVLVPYLYSLFVSLLLTVKLFTLSFCGSNIISYFYCDCVPLISLLCSDTHELELIILIFSGCNL
LSSLLIVLVSYMFIFVAILRMNSKEGRSKAFSTCSSHLTVVVVFYGTLLFIYLQPKSSHTFEIDKMASVF
YTLVIPMLNPLIYSLRNKEVKEALKRTLTQGLRIHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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