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Report for CCDS30124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30124.1 Public Mus musculus X Gpc4 23 108 98 CCDS HistoryNCBI Gene:14735Re-query CCDS DB by CCDS ID:30124.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033450.2 ENSMUSP00000033450.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033450.2Link to Ensembl Protein Viewer:ENSMUSP00000033450.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033450Re-query CCDS DB by Protein ID:ENSMUSP00000033450
Original member Current member NCBI NM_008150.2 NP_032176.2 Accepted alive Link to Nucleotide Sequence:NM_008150.2Link to Protein Sequence:NP_032176.2Re-query CCDS DB by Nucleotide ID:NM_008150Re-query CCDS DB by Protein ID:NP_032176Link to BLAST:NP_032176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032176.2 557 P51655 557 100% 0 0

Chromosomal Locations for CCDS 30124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52053521 52053726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52053817 52053992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52054446 52054582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52056660 52056806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52056901 52057031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52062858 52063023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52074294 52074685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52091642 52091800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52164616 52164775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGCACGCTTAGGCTTGCTCGCGCTCCTCTGCACCCTGGCCGCGCTCAGCGCCTCGCTGCTGGCTGCGG
AGCTCAAGTCGAAAAGTTGCTCGGAAGTGCGACGTCTCTACGTGTCCAAAGGCTTCAACAAGAATGATGC
CCCCCTCTATGAGATCAACGGTGACCATTTGAAGATCTGTCCCCAGGATTATACATGCTGTTCTCAAGAG
ATGGAAGAGAAGTACAGCCTGCAAAGTAAAGATGATTTCAAAACCGTGGTCAGCGAACAGTGCAACCATT
TGCAAGCCATCTTTGCATCCCGTTACAAGAAGTTTGATGAATTCTTCAAAGAACTTCTTGAAAATGCAGA
GAAATCCCTGAATGATATGTTCGTGAAGACATATGGCCACTTATACATGCAAAATTCAGAGCTATTTAAA
GATCTCTTCGTTGAGTTGAAGCGCTACTATGTGGCGGGAAATGTGAACCTGGAAGAAATGTTAAATGACT
TCTGGGCTCGCCTTCTGGAGCGCATGTTTCGCCTGGTGAACTCCCAGTACCATTTTACAGATGAGTACTT
GGAATGTGTGAGCAAATATACAGAGCAGCTGAAGCCTTTTGGAGATGTCCCTCGGAAACTGAAGCTCCAG
GTTACCCGCGCATTTGTTGCAGCCAGGACCTTCGCTCAAGGCTTAGCAGTTGCAAGGGATGTAGTAAGCA
AAGTGTCCGTGGTGAACCCCACAGCTCAGTGCACCCATGCACTGCTGAAGATGATCTACTGCTCCCACTG
CCGGGGCCTGGTGACTGTGAAGCCCTGTTACAACTATTGCTCAAACATCATGCGAGGCTGTTTGGCCAAC
CAAGGAGACCTTGATTTTGAGTGGAACAATTTCATAGATGCTATGCTGATGGTGGCAGAGAGGCTGGAGG
GTCCTTTCAACATTGAGTCCGTTATGGATCCCATCGATGTGAAGATTTCTGATGCTATCATGAATATGCA
GGATAATAGTGTTCAAGTGTCTCAGAAGGTTTTCCAAGGCTGTGGCCCTCCGAAGCCTCTCCCAGCTGGA
CGAATTTCTCGCTCCATCTCTGAAAGTGCCTTCAGTGCTCGATTCAGACCTTATCATCCAGAGCAACGCC
CAACCACGGCAGCTGGCACTAGTTTGGACCGACTGGTTACTGATGTCAAGGAGAAACTGAAACAAGCTAA
GAAGTTCTGGTCCTCTCTCCCAAGCACCGTTTGCAATGATGAGAGGATGGCAGCAGGAAATGAAAATGAG
GATGACTGCTGGAATGGCAAAGGCAAAAGCAGGTACCTGTTTGCAGTGACAGGAAATGGATTGGCCAACC
AGGGCAACAACCCAGAAGTCCAGGTTGACACCAGCAAGCCAGACATACTGATCCTTCGTCAGATCATGGC
CCTTCGGGTTATGACCAGTAAAATGAAGAATGCTTACAATGGAAATGACGTGGACTTCTTTGACATCAGT
GATGAGAGTAGTGGAGAGGGAAGTGGAAGCGGATGTGAATATCAGCAGTGCCCTTCGGAGTTCGAGTACA
ACGCCACTGACCATTCTGGGAAGAGTGCCAACGAGAAAGCTGACAGTGCCGGTGGTGCCCATGCAGAGGC
AAAGCCCTACCTCCTCGCTGCTCTCTGCATCCTGTTTCTCGCTGTGCAGGGAGAGTGGAGATAA

Translation (557 aa):
MARLGLLALLCTLAALSASLLAAELKSKSCSEVRRLYVSKGFNKNDAPLYEINGDHLKICPQDYTCCSQE
MEEKYSLQSKDDFKTVVSEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFK
DLFVELKRYYVAGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQ
VTRAFVAARTFAQGLAVARDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKPCYNYCSNIMRGCLAN
QGDLDFEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVSQKVFQGCGPPKPLPAG
RISRSISESAFSARFRPYHPEQRPTTAAGTSLDRLVTDVKEKLKQAKKFWSSLPSTVCNDERMAAGNENE
DDCWNGKGKSRYLFAVTGNGLANQGNNPEVQVDTSKPDILILRQIMALRVMTSKMKNAYNGNDVDFFDIS
DESSGEGSGSGCEYQQCPSEFEYNATDHSGKSANEKADSAGGAHAEAKPYLLAALCILFLAVQGEWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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