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Report for CCDS27231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27231.1 Public Mus musculus 14 Gnrh1 23 108 98 CCDS HistoryNCBI Gene:14714Re-query CCDS DB by CCDS ID:27231.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111095.3 ENSMUSP00000106724.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111095.3Link to Ensembl Protein Viewer:ENSMUSP00000106724.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111095Re-query CCDS DB by Protein ID:ENSMUSP00000106724
Original member Current member EBI ENSMUST00000223951.1 ENSMUSP00000153071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223951.1Link to Ensembl Protein Viewer:ENSMUSP00000153071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223951Re-query CCDS DB by Protein ID:ENSMUSP00000153071
Original member NCBI NM_008145.3 NP_032171.1 Updated not alive Link to Nucleotide Sequence:NM_008145.3Link to Protein Sequence:NP_032171.1Re-query CCDS DB by Nucleotide ID:NM_008145Re-query CCDS DB by Protein ID:NP_032171
Current member NCBI NM_008145.4 NP_032171.1 Accepted alive Link to Nucleotide Sequence:NM_008145.4Link to Protein Sequence:NP_032171.1Re-query CCDS DB by Nucleotide ID:NM_008145Re-query CCDS DB by Protein ID:NP_032171Link to BLAST:NP_032171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032171.1 90 P13562 90 100% 0 0

Chromosomal Locations for CCDS 27231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 67746346 67746480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67747803 67747898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67749250 67749291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGATCCTCAAACTGATGGCCGGCATTCTACTGCTGACTGTGTGTTTGGAAGGCTGCTCCAGCCAGCACT
GGTCCTATGGGTTGCGCCCTGGGGGAAAGAGAAACACTGAACACTTGGTTGAGTCTTTCCAAGAGATGGG
CAAGGAGGTGGATCAAATGGCAGAACCCCAGCACTTCGAATGTACTGTCCACTGGCCCCGTTCACCCCTC
AGGGATCTGCGAGGAGCTCTGGAAAGTCTGATTGAAGAGGAAGCCAGGCAGAAGAAGATGTAG

Translation (90 aa):
MILKLMAGILLLTVCLEGCSSQHWSYGLRPGGKRNTEHLVESFQEMGKEVDQMAEPQHFECTVHWPRSPL
RDLRGALESLIEEEARQKKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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