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Report for CCDS12397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12397.1 Public Homo sapiens 19 NCAN 24 110 108 CCDS HistoryNCBI Gene:1463Re-query CCDS DB by CCDS ID:12397.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252575.11 ENSP00000252575.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252575.11Link to Ensembl Protein Viewer:ENSP00000252575.4Re-query CCDS DB by Nucleotide ID:ENST00000252575Re-query CCDS DB by Protein ID:ENSP00000252575
Original member Current member NCBI NM_004386.3 NP_004377.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004386.3Link to Protein Sequence:NP_004377.2Re-query CCDS DB by Nucleotide ID:NM_004386Re-query CCDS DB by Protein ID:NP_004377Link to BLAST:NP_004377.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004377.2 1321 O14594 1321 100% 0 0

Chromosomal Locations for CCDS 12397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19216954 19217026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19218915 19219316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19224021 19224195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19224306 19224433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19224977 19225270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19226486 19227073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19227281 19228639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19233789 19233905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19234983 19235096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19238253 19238411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19240603 19240685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19245313 19245457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19248700 19248882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19249766 19249911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3966 nt):
ATGGGGGCCCCGTTTGTCTGGGCCTTGGGCCTTTTGATGCTGCAGATGCTGCTCTTTGTGGCTGGGGAAC
AGGGCACACAGGATATCACCGATGCCAGCGAAAGGGGGCTCCACATGCAGAAGCTGGGGTCTGGGTCAGT
GCAGGCTGCGCTGGCGGAGCTGGTGGCCCTGCCCTGTCTCTTTACCCTGCAGCCACGGCCAAGCGCAGCC
CGAGATGCCCCTCGGATAAAGTGGACCAAGGTGCGGACTGCGTCGGGCCAGCGACAGGACTTGCCCATCC
TGGTGGCCAAGGACAATGTCGTGAGGGTGGCCAAAAGCTGGCAGGGACGAGTGTCACTGCCTTCCTACCC
CCGGCGCCGAGCCAACGCCACGCTACTTCTGGGGCCACTGAGGGCCAGTGACTCTGGGCTGTACCGCTGC
CAGGTGGTGAGGGGCATCGAGGATGAGCAGGACCTGGTGCCCTTGGAGGTGACAGGTGTTGTGTTCCACT
ACCGATCAGCCCGGGACCGCTATGCACTGACCTTCGCTGAGGCCCAGGAGGCCTGCCGTCTCAGCTCAGC
CATCATTGCAGCCCCTCGGCATCTACAGGCTGCCTTTGAGGATGGCTTTGACAACTGTGATGCTGGCTGG
CTCTCTGACCGCACTGTTCGGTATCCTATCACCCAGTCCCGTCCTGGTTGCTATGGCGACCGTAGCAGCC
TTCCAGGGGTTCGGAGCTATGGGAGGCGCAACCCACAGGAACTCTACGATGTGTATTGCTTTGCCCGGGA
GCTGGGGGGCGAGGTCTTCTACGTGGGCCCGGCCCGCCGCCTGACACTGGCCGGCGCGCGTGCACAGTGC
CGCCGCCAGGGTGCCGCGCTGGCCTCGGTGGGACAGCTGCACCTGGCCTGGCATGAGGGCCTGGACCAGT
GCGACCCGGGCTGGCTGGCCGACGGCAGCGTGCGCTACCCGATCCAGACGCCGCGCCGGCGCTGCGGGGG
CCCAGCCCCGGGCGTGCGCACCGTCTACCGCTTCGCTAACCGGACCGGCTTCCCCTCACCCGCCGAGCGC
TTCGACGCCTACTGCTTCCGAGCTCATCACCCCACGTCACAACATGGAGACCTAGAGACCCCATCCTCTG
GGGATGAGGGGGAGATTCTGTCAGCAGAGGGGCCCCCAGTTAGAGAACTGGAGCCCACCCTGGAGGAGGA
AGAGGTGGTCACCCCTGACTTCCAGGAGCCTCTGGTGTCCAGTGGGGAAGAAGAAACCCTGATTTTGGAG
GAGAAGCAGGAGTCTCAACAGACCCTCAGCCCTACCCCTGGGGACCCCATGCTGGCCTCATGGCCCACTG
GGGAAGTGTGGCTAAGCACGGTGGCCCCCAGCCCTAGCGACATGGGGGCAGGCACTGCAGCAAGTTCACA
CACGGAGGTGGCCCCAACTGACCCTATGCCTAGGAGAAGGGGGCGCTTCAAAGGGTTGAATGGGCGCTAC
TTCCAGCAGCAGGAACCGGAGCCGGGGCTGCAAGGGGGGATGGAGGCCAGCGCCCAGCCCCCCACCTCAG
AGGCTGCAGTGAACCAAATGGAGCCTCCGTTGGCCATGGCAGTCACAGAGATGTTGGGCAGTGGCCAGAG
CCGGAGCCCCTGGGCTGATCTGACCAATGAGGTGGATATGCCTGGAGCTGGTTCTGCTGGTGGCAAGAGC
TCCCCAGAGCCCTGGCTGTGGCCCCCTACCATGGTCCCACCCAGCATCTCAGGCCACAGCAGGGCCCCTG
TCCTGGAGCTAGAGAAAGCCGAGGGCCCCAGTGCCAGGCCAGCCACCCCAGACCTGTTTTGGTCCCCCTT
GGAGGCCACTGTCTCAGCTCCCAGCCCTGCCCCCTGGGAGGCATTCCCTGTGGCCACCTCCCCAGATCTC
CCTATGATGGCCATGCTGCGTGGTCCCAAAGAGTGGATGCTACCACACCCCACCCCCATCTCCACCGAGG
CCAATAGAGTTGAGGCACATGGTGAGGCCACCGCCACGGCTCCACCCTCCCCTGCTGCAGAGACCAAGGT
GTATTCCCTGCCTCTCTCTTTGACCCCAACAGGACAGGGTGGAGAGGCCATGCCCACAACACCTGAGTCC
CCCAGGGCAGACTTCAGAGAAACTGGGGAGACCAGCCCTGCTCAGGTCAACAAAGCTGAGCACTCCAGCT
CCAGCCCATGGCCTTCTGTAAACAGGAATGTGGCTGTAGGTTTTGTCCCCACTGAGACTGCCACTGAGCC
AACGGGCCTCAGGGGTATCCCGGGGTCTGAGTCTGGGGTCTTCGACACAGCAGAAAGCCCCACTTCTGGC
TTGCAGGCCACTGTAGATGAGGTGCAGGACCCCTGGCCCTCAGTGTACAGCAAAGGGCTGGATGCAAGTT
CCCCATCTGCCCCCCTGGGGAGCCCTGGAGTCTTCTTGGTACCCAAAGTCACCCCAAATTTGGAGCCTTG
GGTTGCTACAGATGAAGGACCCACTGTGAATCCCATGGATTCCACAGTCACGCCGGCCCCCAGTGATGCT
AGTGGAATTTGGGAACCTGGATCCCAGGTGTTTGAAGAAGCCGAAAGCACCACCTTGAGCCCTCAGGTGG
CCCTGGATACAAGCATTGTGACGCCCCTCACGACCCTGGAGCAGGGGGACAAGGTTGGAGTTCCAGCCAT
GTCTACACTGGGCTCCTCAAGCTCCCAACCCCACCCAGAGCCAGAGGATCAGGTGGAGACCCAGGGAACA
TCAGGAGCTTCAGTGCCTCCGCATCAGAGCAGTCCCCTAGGGAAACCGGCTGTTCCTCCTGGGACACCGA
CTGCAGCCAGTGTGGGCGAGTCTGCCTCAGTTTCCTCAGGGGAGCCTACGGTACCGTGGGACCCCTCCAG
CACCCTGCTGCCTGTCACCCTGGGCATAGAGGACTTCGAACTGGAGGTCCTGGCAGGGAGCCCGGGTGTA
GAGAGCTTCTGGGAGGAGGTGGCAAGTGGAGAGGAGCCAGCCCTGCCAGGGACCCCTATGAATGCAGGTG
CGGAGGAGGTGCACTCAGATCCCTGTGAGAACAACCCTTGTCTTCATGGAGGGACATGTAATGCCAATGG
CACCATGTATGGCTGTAGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTGACATTGATGACTGC
CTCTGCAGCCCCTGTGAGAATGGAGGCACCTGTATTGATGAGGTCAATGGCTTTGTCTGCCTTTGCCTCC
CCAGCTATGGGGGCAGCTTTTGTGAGAAAGACACCGAGGGCTGTGACCGCGGCTGGCATAAGTTCCAGGG
CCACTGTTACCGCTATTTTGCCCACCGGAGGGCATGGGAAGATGCCGAGAAGGACTGCCGCCGCCGCTCC
GGCCACCTGACCAGCGTCCACTCACCGGAGGAACACAGCTTCATTAATAGCTTTGGGCATGAAAACACGT
GGATCGGCCTGAACGACAGGATCGTGGAGAGAGATTTCCAGTGGACGGACAACACCGGGCTGCAATTTGA
GAACTGGCGAGAGAACCAGCCGGACAATTTCTTCGCGGGTGGCGAGGACTGTGTGGTGATGGTGGCGCAT
GAAAGCGGGCGCTGGAACGATGTCCCCTGCAACTACAACCTACCCTATGTCTGCAAGAAGGGCACAGTGC
TCTGTGGTCCCCCTCCGGCAGTGGAGAATGCCTCACTCATCGGTGCCCGCAAGGCCAAGTACAATGTCCA
TGCCACTGTAAGGTACCAGTGCAATGAAGGATTTGCCCAGCACCATGTGGCCACCATTCGATGCCGGAGC
AATGGCAAGTGGGACAGGCCCCAAATTGTCTGCACCAAACCCAGACGTTCACATCGGATGCGGCGACACC
ACCACCACCACCAACACCACCACCAGCATCACCACCACAAATCCCGCAAGGAGCGCAGAAAACACAAGAA
ACACCCAACGGAGGACTGGGAGAAGGACGAAGGGAATTTCTGCTGA

Translation (1321 aa):
MGAPFVWALGLLMLQMLLFVAGEQGTQDITDASERGLHMQKLGSGSVQAALAELVALPCLFTLQPRPSAA
RDAPRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSYPRRRANATLLLGPLRASDSGLYRC
QVVRGIEDEQDLVPLEVTGVVFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDNCDAGW
LSDRTVRYPITQSRPGCYGDRSSLPGVRSYGRRNPQELYDVYCFARELGGEVFYVGPARRLTLAGARAQC
RRQGAALASVGQLHLAWHEGLDQCDPGWLADGSVRYPIQTPRRRCGGPAPGVRTVYRFANRTGFPSPAER
FDAYCFRAHHPTSQHGDLETPSSGDEGEILSAEGPPVRELEPTLEEEEVVTPDFQEPLVSSGEEETLILE
EKQESQQTLSPTPGDPMLASWPTGEVWLSTVAPSPSDMGAGTAASSHTEVAPTDPMPRRRGRFKGLNGRY
FQQQEPEPGLQGGMEASAQPPTSEAAVNQMEPPLAMAVTEMLGSGQSRSPWADLTNEVDMPGAGSAGGKS
SPEPWLWPPTMVPPSISGHSRAPVLELEKAEGPSARPATPDLFWSPLEATVSAPSPAPWEAFPVATSPDL
PMMAMLRGPKEWMLPHPTPISTEANRVEAHGEATATAPPSPAAETKVYSLPLSLTPTGQGGEAMPTTPES
PRADFRETGETSPAQVNKAEHSSSSPWPSVNRNVAVGFVPTETATEPTGLRGIPGSESGVFDTAESPTSG
LQATVDEVQDPWPSVYSKGLDASSPSAPLGSPGVFLVPKVTPNLEPWVATDEGPTVNPMDSTVTPAPSDA
SGIWEPGSQVFEEAESTTLSPQVALDTSIVTPLTTLEQGDKVGVPAMSTLGSSSSQPHPEPEDQVETQGT
SGASVPPHQSSPLGKPAVPPGTPTAASVGESASVSSGEPTVPWDPSSTLLPVTLGIEDFELEVLAGSPGV
ESFWEEVASGEEPALPGTPMNAGAEEVHSDPCENNPCLHGGTCNANGTMYGCSCDQGFAGENCEIDIDDC
LCSPCENGGTCIDEVNGFVCLCLPSYGGSFCEKDTEGCDRGWHKFQGHCYRYFAHRRAWEDAEKDCRRRS
GHLTSVHSPEEHSFINSFGHENTWIGLNDRIVERDFQWTDNTGLQFENWRENQPDNFFAGGEDCVVMVAH
ESGRWNDVPCNYNLPYVCKKGTVLCGPPPAVENASLIGARKAKYNVHATVRYQCNEGFAQHHVATIRCRS
NGKWDRPQIVCTKPRRSHRMRRHHHHHQHHHQHHHHKSRKERRKHKKHPTEDWEKDEGNFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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