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Report for CCDS23354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23354.1 Public Mus musculus 9 Gclc 23 108 98 CCDS HistoryNCBI Gene:14629Re-query CCDS DB by CCDS ID:23354.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034905.8 ENSMUSP00000034905.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034905.8Link to Ensembl Protein Viewer:ENSMUSP00000034905.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034905Re-query CCDS DB by Protein ID:ENSMUSP00000034905
Original member Current member NCBI NM_010295.2 NP_034425.1 Accepted alive Link to Nucleotide Sequence:NM_010295.2Link to Protein Sequence:NP_034425.1Re-query CCDS DB by Nucleotide ID:NM_010295Re-query CCDS DB by Protein ID:NP_034425Link to BLAST:NP_034425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034425.1 637 P97494 637 100% 0 0

Chromosomal Locations for CCDS 23354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 77754810 77754959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77775079 77775191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77776126 77776308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77779522 77779635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77781084 77781142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77781234 77781367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77785334 77785408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77785750 77785866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77786711 77786849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77787277 77787389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77787807 77787899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77788188 77788292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77791715 77791796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77791880 77791983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77792053 77792173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77793040 77793251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGGGGCTGCTGTCCCAAGGCTCGCCACTGAGCTGGGAAGAGACCCAGCGCCACGCCGACCACGTGCGGA
GGCACGGCATCCTCCAGTTCCTGCACATCTACCACGCAGTCAAGGACCGGCACAAGGACGTGCTCAAGTG
GGGTGACGAGGTGGAGTACATGTTGGTGTCCTTCGATCATGAAAATAGGAAAGTCCAGTTGTTACTGAAT
GGAGGCGATGTTCTTGAGACTCTGCAGGAGAAGGGGGAGAGGACAAACCCCAACCATCCGACCCTCTGGA
GACCAGAGTATGGGAGTTACATGATCGAAGGAACGCCTGGCCAGCCCTACGGAGGAACGATGTCTGAGTT
CAACACTGTGGAGGCCAATATGAGGAAACGCCGGAAGGAGGCTACTTCTGTACTAGGAGAGCATCAGGCT
CTCTGCACCATCACTTCATTCCCCAGACTAGGCTGTCCTGGATTCACACTGCCAGAACACAGACCCAACC
CAGAGGAAGGAGGCGCATCAAAGTCCCTCTTCTTTCCAGATGAAGCCATAAACAAGCACCCCCGCTTCGG
TACTCTAACAAGAAACATCCGGCATCGGAGAGGAGAAAAGGTTGTCATCAATGTGCCAATATTCAAGGAC
AAGAATACACCATCTCCATTTGTAGAAACATTTCCAGAAGATGCGGAGGCATCAAAGGCTTCTCAGCCAG
ACCATATCTACATGGATGCCATGGGATTCGGGATGGGCAACTGCTGTCTCCAGGTGACATTCCAAGCCTG
CAGCATATCTGAGGCAAGATACCTTTATGATCAGCTGGCCACTATCTGCCCAATTGTTATGGCTTTGAGT
GCTGCATCTCCATTTTACCGAGGCTACGTGTCAGACATTGATTGTCGCTGGGGAGTGATTTCTGCCTCTG
TAGATGATAGAACACGGGAGGAGAGAGGCCTGGAGCCTCTGAAGAACAATCGCTTTAGGATCAGTAAGTC
TCGGTATGACTCAATAGATAGCTACCTGTCTAAGTGTGGGGAGAAGTACAATGACATCGACCTGACCATC
GATAAGGAGATCTACGAGCAGCTCCTGGAGGAAGGCATCGATCATCTTCTGGCACAGCACGTTGCTCATC
TCTTTATTAGAGACCCACTCACCCTTTTTGAAGAGAAAATACACCTGGATGATGCCAACGAGTCTGACCA
TTTTGAGAATATTCAGTCTACAAACTGGCAGACAATGAGGTTTAAGCCTCCTCCTCCAAACTCAGATATT
GGATGGAGAGTAGAGTTCCGACCAATGGAGGTGCAGTTAACAGACTTTGAGAACTCTGCCTATGTGGTAT
TCGTGGTACTGCTCACTAGGGTGATCCTCTCATACAAACTAGACTTCCTCATTCCGCTGTCCAAGGTTGA
CGAGAACATGAAAGTGGCCCAGAAGCGAGATGCTGTCTTGCAGGGGATGTTTTATTTCAGGAAAGACATC
TGCAAAGGCGGCAACGCTGTGGTGGACGGGTGCAGCAAGGCCCAGAGCAGCTCTGAGCCAGCTGCAGAGG
AGTACACCCTGATGAGCATAGACACCATCATCAATGGGAAGGAAGGGGTATTTCCTGGACTCATCCCCAT
TCTGAACTCCTATCTGGAGAACATGGAAGTTGATGTGGACACCCGATGCAGTATTCTGAACTACCTAAAG
CTAATTAAGAAGAGAGCATCTGGAGAACTAATGACTGTTGCCAGGTGGATGAGAGAGTTCATTGCAAACC
ATCCTGACTACAAGCAAGACAGTGTAATAACTGATGAAATCAACTATAGCCTCATTTGGAAGTGCAACCA
AATTGCAGATGAGCTGTGTGAATGTCCAGAGTTACTTGGATCAGGATTTAGAAAAGCGAAGTACAGTGGA
GGTAAAAGCGACCCTTCAGCCTAG

Translation (637 aa):
MGLLSQGSPLSWEETQRHADHVRRHGILQFLHIYHAVKDRHKDVLKWGDEVEYMLVSFDHENRKVQLLLN
GGDVLETLQEKGERTNPNHPTLWRPEYGSYMIEGTPGQPYGGTMSEFNTVEANMRKRRKEATSVLGEHQA
LCTITSFPRLGCPGFTLPEHRPNPEEGGASKSLFFPDEAINKHPRFGTLTRNIRHRRGEKVVINVPIFKD
KNTPSPFVETFPEDAEASKASQPDHIYMDAMGFGMGNCCLQVTFQACSISEARYLYDQLATICPIVMALS
AASPFYRGYVSDIDCRWGVISASVDDRTREERGLEPLKNNRFRISKSRYDSIDSYLSKCGEKYNDIDLTI
DKEIYEQLLEEGIDHLLAQHVAHLFIRDPLTLFEEKIHLDDANESDHFENIQSTNWQTMRFKPPPPNSDI
GWRVEFRPMEVQLTDFENSAYVVFVVLLTRVILSYKLDFLIPLSKVDENMKVAQKRDAVLQGMFYFRKDI
CKGGNAVVDGCSKAQSSSEPAAEEYTLMSIDTIINGKEGVFPGLIPILNSYLENMEVDVDTRCSILNYLK
LIKKRASGELMTVARWMREFIANHPDYKQDSVITDEINYSLIWKCNQIADELCECPELLGSGFRKAKYSG
GKSDPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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