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Report for CCDS38838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38838.1 Public Mus musculus 4 Skint3 23 108 98 CCDS HistoryNCBI Gene:195564Re-query CCDS DB by CCDS ID:38838.1Re-query CCDS DB by GeneID:195564See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038455.11 ENSMUSP00000042662.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038455.11Link to Ensembl Protein Viewer:ENSMUSP00000042662.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038455Re-query CCDS DB by Protein ID:ENSMUSP00000042662
Original member Current member NCBI NM_177578.4 NP_808246.1 Accepted alive Link to Nucleotide Sequence:NM_177578.4Link to Protein Sequence:NP_808246.1Re-query CCDS DB by Nucleotide ID:NM_177578Re-query CCDS DB by Protein ID:NP_808246Link to BLAST:NP_808246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808246.1 386 A7TZF0-2 386 100% 0 0

Chromosomal Locations for CCDS 38838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112235741 112235816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112253756 112254103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112255619 112255900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112277554 112277688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112280194 112280319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112290265 112290389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112298139 112298207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGGATCTATACAAATAATTTTTGCTGCATACTGTGTTGTCTTGTGCGTCCTCCAGATGTTAGTACTGA
GTTCAGAGCAGTTCACAATTACTGGCTTAGAGAGGCCAGTCCTTGCCCCATTAGGTGGAATCCTTGAACT
CAGTTGTCAGTTGTCCCCACCACAAAATGCACAACAAATGGAGATTCGCTGGTTCCGGAATCGCTATACA
GAACCTGTGTACCTGTACAGGAATGGTAAAGACCTGCATGGAGAAACTATCTCCAAGTATGTGGAGCGGA
CAGAACTCCTAAAACATGACATTGGAAAAGGGAAAGTGACCCTCAGGGTCTTTAAAGTGACAGTTGATGA
TGATGGATCATACCATTGTGTCTTCAAAGATGGTATATTCTATGAAGAGCATATCACAGAGGTCAAGGTC
ACTGCCACAAGCTCAGATATAAAGATTATAATGCATCCCCCGAATATTAAAGGTGTGATGCTTGAGTGTC
ATTCAAGAGGTTGGTTCCCTCAGCCTCATATGGAATGGAGAGATAGCAATGGACAGGTCATTCCAGCTAC
ATCAAAATCCCAGTCACAGGATGAAAACAAATTGTTCAACATGACAATGAACCTTTTTGCTGATGTTGGC
CTACACCAGATTGTCACTTGCTACATTCAAAACCTTTTAACTCATCAAGAAGAAAGCATAAGTATTGTCC
TAACAGTCCCAATTTCAGATCAACATTTTGAATTGGATACTTTATACTTGGAAGATATTAGTGTGATCCT
GTGTGTGGTGATTGTGTTTAACCTCAAGCTCAATTTACTTACTTACTACAGATTGGAACGTAAATATGAT
GGATGTACACCTGGATGCAAAGCATGCTTCTATATATTAAAAATAATAATAATAATATTGCCATTCGTGT
TTACCTTTGGGTGCTATAATGCAATCTTTTTAAAATATCATCAATTACAGAAAAAAGTTTCTATTCCAGA
TCCCTTATATTACTTCTACACTAGCTGGCTTGTGAATATGGAAATGCTGGGAGTATTTCTGGTCTTCTTT
CCTACTTTTATAAACTTAATAGAATTTTCGCAATTCATAAAAACTGTTCCAAAGCCCATATGGTTATGCC
AAGAGAATATGAGAGAAGATGATGCAATAAGACACAGATAA

Translation (386 aa):
MGSIQIIFAAYCVVLCVLQMLVLSSEQFTITGLERPVLAPLGGILELSCQLSPPQNAQQMEIRWFRNRYT
EPVYLYRNGKDLHGETISKYVERTELLKHDIGKGKVTLRVFKVTVDDDGSYHCVFKDGIFYEEHITEVKV
TATSSDIKIIMHPPNIKGVMLECHSRGWFPQPHMEWRDSNGQVIPATSKSQSQDENKLFNMTMNLFADVG
LHQIVTCYIQNLLTHQEESISIVLTVPISDQHFELDTLYLEDISVILCVVIVFNLKLNLLTYYRLERKYD
GCTPGCKACFYILKIIIIILPFVFTFGCYNAIFLKYHQLQKKVSIPDPLYYFYTSWLVNMEMLGVFLVFF
PTFINLIEFSQFIKTVPKPIWLCQENMREDDAIRHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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