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Report for CCDS23917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23917.1 Public Mus musculus 10 Cisd1 23 108 98 CCDS HistoryNCBI Gene:52637Re-query CCDS DB by CCDS ID:23917.1Re-query CCDS DB by GeneID:52637See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045887.8 ENSMUSP00000043559.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045887.8Link to Ensembl Protein Viewer:ENSMUSP00000043559.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045887Re-query CCDS DB by Protein ID:ENSMUSP00000043559
Original member Current member NCBI NM_134007.4 NP_598768.1 Accepted alive Link to Nucleotide Sequence:NM_134007.4Link to Protein Sequence:NP_598768.1Re-query CCDS DB by Nucleotide ID:NM_134007Re-query CCDS DB by Protein ID:NP_598768Link to BLAST:NP_598768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598768.1 108 Q91WS0 108 100% 0 0

Chromosomal Locations for CCDS 23917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 71331037 71331126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71336214 71336419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71344724 71344754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGGCCTCAGCTCCAACTCCGCTGTGCGAGTTGAGTGGATCGCGGCCGTCACCTTTGCTGCTGGCACAG
CCGCTCTCGGTTACCTGGCTTACAAGAAGTTCTACGCTAAAGAGAATCGCACCAAAGCTATGGTGAATCT
TCAGATCCAGAAAGACAACCCGAAGGTGGTGCATGCCTTCGACATGGAGGATCTGGGGGATAAGGCCGTG
TACTGCCGATGCTGGAGGTCTAAAAAGTTCCCCTTCTGCGATGGGGCTCACATAAAGCACAACGAAGAGA
CTGGCGACAACGTAGGACCTCTGATCATCAAGAAAAAGGAAACCTAA

Translation (108 aa):
MGLSSNSAVRVEWIAAVTFAAGTAALGYLAYKKFYAKENRTKAMVNLQIQKDNPKVVHAFDMEDLGDKAV
YCRCWRSKKFPFCDGAHIKHNEETGDNVGPLIIKKKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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