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Report for CCDS20067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20067.1 Public Mus musculus 6 Epha1 23 108 98 CCDS HistoryNCBI Gene:13835Re-query CCDS DB by CCDS ID:20067.1Re-query CCDS DB by GeneID:13835See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073387.4 ENSMUSP00000073099.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073387.4Link to Ensembl Protein Viewer:ENSMUSP00000073099.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073387Re-query CCDS DB by Protein ID:ENSMUSP00000073099
Original member Current member NCBI NM_023580.4 NP_076069.2 Accepted alive Link to Nucleotide Sequence:NM_023580.4Link to Protein Sequence:NP_076069.2Re-query CCDS DB by Nucleotide ID:NM_023580Re-query CCDS DB by Protein ID:NP_076069Link to BLAST:NP_076069.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076069.2 977 Q60750 977 100% 0 0

Chromosomal Locations for CCDS 20067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42358768 42358846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42358936 42359091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42360545 42360738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42361005 42361154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42361286 42361492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42361594 42361655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42361777 42361962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42362657 42362782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42363562 42363620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42363810 42363906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42364161 42364311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42364537 42364664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42364776 42365120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42365419 42365574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42365776 42366178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42367586 42367867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42372175 42372242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42373126 42373210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGGAGCGGCGCTGGCCCCTGGGGCTTGCATTGCTGCTGCTGCTGCTCTGCGCCCCGCTGCCCCCGGGGG
CGCGCGCCGAGGAAGTCACTCTAATGGACACAAGCACAGCACAAGGAGAGCTGGGCTGGCTTCTGGATCC
CCCAGAGACTGGGTGGAGTGAGGTGCAACAAATGCTAAACGGGACACCCCTGTACATGTACCAAGACTGC
CCAATACAGGAAGGTGGGGACACTGACCACTGGCTTCGCTCCAATTGGATCTACCGCGGAGAGGAAGCTT
CACGCATCTACGTGGAGCTGCAGTTCACCGTGCGGGACTGTAAGAGTTTCCCAGGGGGAGCTGGGCCTCT
GGGATGCAAAGAGACCTTCAACCTTTTCTACATGGAGAGTGACCAGGATGTGGGCATTCAGCTCCGACGA
CCTTTGTTCCAAAAGGTAACAACTGTGGCAGCAGACCAGAGCTTCACCATCAGAGACCTGGCATCTGGCT
CTGTAAAGCTGAATGTAGAACGCTGCTCGTTGGGCCACCTCACCCGCCGTGGCCTCTACTTAGCTTTCCA
CAACCCGGGTTCCTGTGTGGCGCTAGTGTCTGTAAGGGTGTTCTACCAGCGCTGTGCCGAGACCGTGCAT
GGCTTGGCCCACTTCCCTGACACTCTCCCTGGACCTGGAGGGTTGGTTGAAGTAGCTGGAACGTGCCTCT
CCCATGCACAGATCAGCTTGGGGTCCTCAGGTACACCACGAATGCACTGCAGCCCTGATGGCGAGTGGCT
GGTGCCTGTGGGTCAGTGCCAGTGCGAGCCTGGCTATGAAGAAAGCAGTGGAAATGTGGGATGCACTGCC
TGTCCTACTGGTTTCTATCGAGTGGACATGAATACACTCCGTTGTCTCAAGTGCCCCCAACATAGCATAG
CAGAGTCTGAGGGGTCTACCATCTGTACCTGTGAGAATGGACATTATCGAGCCCCTGGGGAGGGTCCCCA
GGTAGCATGCACACGTCCCCCATCGGCTCCCCAAAATCTGAGCTTCTCCACATCAGGGACTCAACTCTCC
CTGCGCTGGGAGCCCCCCAGAGATACAGGGGGACGCCATGATATCAGATACAGCGTGGAGTGCTTGCAGT
GTCGGGGCATTGCACAGGATGGGGGTCCCTGCCAACCCTGTGGAAAAGGTGTGCACTTTTCCCCGGCTGC
TTCCGGGCTCACCACATCTACCGTGCAAGTGCAAGGCCTCGAGCCTTACGCCAACTACACATTTACCGTC
AAATCCCAAAACAGAGTGTCAGGACTGGACAGTTCCAGCCCTAGCAGCGCCTCCCTCAGTATCAACATGG
GGCACGCAGAGTCACTCTCTGGCCTGTCACTGAAGCTGGTGAAGAAAGAACCGAGGCAGCTGGAGCTGAC
TTGGGCAGGGTCCCGACCCCGAAATCCTGGAGGGAATCTGAGCTATGAGCTGCACGTGCTGAATCAGGAC
GAAGAATGGCACCAGATGGTGTTGGAACCCAGGGTCTTGCTGACAAAACTTCAGCCAGATACCACATACA
TTGTCAGAGTGCGAACACTGACCCCACTGGGGCCTGGCCCTTTCTCCCCTGACCATGAGTTTCGGACAAG
CCCACCAGTTTCCAGAAGCCTGACCGGAGGAGAGATTGTGGCCGTCATCTTTGGATTGCTGCTTGGAATA
GCTCTGCTGATCGGGATTTATGTCTTCCGTTCAAGGAGAGGCCAGAGACAGAGACAGCAGAGGCAGCGTG
AACGCACCACCAATGTCGATCGAGAGGACAAGCTGTGGCTAAAACCCTATGTGGACCTCCAGGCCTATGA
GGACCCTGCACAGGGAGCCTTAGACTTTGCCCAGGAACTGGACCCAGCCTGGCTGATTGTGGACACTGTC
ATAGGAGAAGGGGAGTTTGGTGAAGTGTATCGGGGAGCCCTGAGACTCCCCAGCCAAGATTGCAAGACTG
TGGCCATTAAGACCTTGAAAGATACATCCCCAGATGGCTACTGGTGGAATTTCCTTCGAGAGGCAACTAT
CATGGGCCAGTTCAACCACCCACACATTCTACGCCTAGAAGGTGTCATCACAAAAAGAAAGCCCATCATG
ATCATCACAGAATTTATGGAAAATGGAGCCCTGGATGCCTTTCTGAAGGAACGGGAGGACCAACTAGCTC
CTGGTCAGCTAGTGGCTATGCTACTGGGCATAGCATCAGGCATGAACTGCCTCAGTGGCCACAATTATGT
CCATAGAGACCTGGCTGCCAGGAACATCTTGGTGAATCAGAACCTGTGCTGCAAGGTGTCTGACTTTGGC
TTGACCCGCCTCCTGGATGACTTTGACGGCACCTATGAAACCCAGGGAGGAAAGATCCCCATCCGATGGA
CAGCCCCAGAAGCTATTGCCCATCGGATCTTCACCACAGCCAGTGATGTGTGGAGCTTTGGGATTGTAAT
GTGGGAGGTGTTGAGTTTTGGCGACAAACCCTATGGGGAGATGAGCAACCAAGAGGTAATGAAAAGCATT
GAAGATGGGTACCGGTTGCCCCCTCCTGTGGACTGTCCTGCCCCTCTCTATGAACTCATGAAGAACTGCT
GGGCTTACGATCGTGCCCGTCGACCCCACTTCCTCCAGCTGCAGGCACATCTGGAACAGTTGCTTACTGA
CCCCCATTCCCTAAGGACAATTGCCAACTTTGACCCTAGGGTGACCTTACGCCTGCCCAGCCTGAGTGGC
TCTGATGGGATCCCTTATCGAAGTGTCTCTGAGTGGCTTGAATCCATACGCATGAAGCGCTACATCCTGC
ACTTCCGTTCGGCTGGGCTGGACACCATGGAGTGTGTGCTGGAGCTGACGGCTGAGGACCTGACGCAGAT
GGGAATAACGTTGCCAGGGCACCAGAAACGAATTCTCTGCAGTATTCAAGGATTTAAGGACTGA

Translation (977 aa):
MERRWPLGLALLLLLLCAPLPPGARAEEVTLMDTSTAQGELGWLLDPPETGWSEVQQMLNGTPLYMYQDC
PIQEGGDTDHWLRSNWIYRGEEASRIYVELQFTVRDCKSFPGGAGPLGCKETFNLFYMESDQDVGIQLRR
PLFQKVTTVAADQSFTIRDLASGSVKLNVERCSLGHLTRRGLYLAFHNPGSCVALVSVRVFYQRCAETVH
GLAHFPDTLPGPGGLVEVAGTCLSHAQISLGSSGTPRMHCSPDGEWLVPVGQCQCEPGYEESSGNVGCTA
CPTGFYRVDMNTLRCLKCPQHSIAESEGSTICTCENGHYRAPGEGPQVACTRPPSAPQNLSFSTSGTQLS
LRWEPPRDTGGRHDIRYSVECLQCRGIAQDGGPCQPCGKGVHFSPAASGLTTSTVQVQGLEPYANYTFTV
KSQNRVSGLDSSSPSSASLSINMGHAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQD
EEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPVSRSLTGGEIVAVIFGLLLGI
ALLIGIYVFRSRRGQRQRQQRQRERTTNVDREDKLWLKPYVDLQAYEDPAQGALDFAQELDPAWLIVDTV
IGEGEFGEVYRGALRLPSQDCKTVAIKTLKDTSPDGYWWNFLREATIMGQFNHPHILRLEGVITKRKPIM
IITEFMENGALDAFLKEREDQLAPGQLVAMLLGIASGMNCLSGHNYVHRDLAARNILVNQNLCCKVSDFG
LTRLLDDFDGTYETQGGKIPIRWTAPEAIAHRIFTTASDVWSFGIVMWEVLSFGDKPYGEMSNQEVMKSI
EDGYRLPPPVDCPAPLYELMKNCWAYDRARRPHFLQLQAHLEQLLTDPHSLRTIANFDPRVTLRLPSLSG
SDGIPYRSVSEWLESIRMKRYILHFRSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGFKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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