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Report for CCDS25209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25209.1 Public Mus musculus 11 Ska2 23 108 98 CCDS HistoryNCBI Gene:66140Re-query CCDS DB by CCDS ID:25209.1Re-query CCDS DB by GeneID:66140See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020794.5 ENSMUSP00000020794.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020794.5Link to Ensembl Protein Viewer:ENSMUSP00000020794.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020794Re-query CCDS DB by Protein ID:ENSMUSP00000020794
Original member Current member NCBI NM_025377.3 NP_079653.1 Accepted alive Link to Nucleotide Sequence:NM_025377.3Link to Protein Sequence:NP_079653.1Re-query CCDS DB by Nucleotide ID:NM_025377Re-query CCDS DB by Protein ID:NP_079653Link to BLAST:NP_079653.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079653.1 120 Q9CR46 120 100% 0 0

Chromosomal Locations for CCDS 25209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87109272 87109304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87116104 87116190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87117668 87117844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87121934 87121999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGAGGCGGAGGTCGATAAGCTGGAACTGATGTTCCAGAAAGCTGATTCTGATTTGGATTACCTTCAAT
ATAGGCTGGAATATGAAGTCAAGACTAATCACCCACATTCAGCAGGAGAGAAAAATGCAGTTACAGTTTT
AAAGGAATTATCAGCGATAAAGTCTCGCTATCAAGCTTTATGTGCACGCTTTAAGGCAGTTTCTGTTGAG
CAAAAGGAGACCAAGAGCTGCATTTGTGCTACTTTGAACAAGACAATGACCATGATACAAGAACTACAAA
AGCAAACAAACCTGGAGCTAACTCTACTGACTGAAGAAGAGAAAGCTGCAACAGAGCCATTAAAATCTCA
TATGCCGGACTGA

Translation (120 aa):
MEAEVDKLELMFQKADSDLDYLQYRLEYEVKTNHPHSAGEKNAVTVLKELSAIKSRYQALCARFKAVSVE
QKETKSCICATLNKTMTMIQELQKQTNLELTLLTEEEKAATEPLKSHMPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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