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Report for CCDS22400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22400.1 Public Mus musculus 8 Pgls 23 108 98 CCDS HistoryNCBI Gene:66171Re-query CCDS DB by CCDS ID:22400.1Re-query CCDS DB by GeneID:66171See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034264.10 ENSMUSP00000034264.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034264.10Link to Ensembl Protein Viewer:ENSMUSP00000034264.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034264Re-query CCDS DB by Protein ID:ENSMUSP00000034264
Original member Current member NCBI NM_025396.3 NP_079672.1 Accepted alive Link to Nucleotide Sequence:NM_025396.3Link to Protein Sequence:NP_079672.1Re-query CCDS DB by Nucleotide ID:NM_025396Re-query CCDS DB by Protein ID:NP_079672Link to BLAST:NP_079672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079672.1 257 Q9CQ60 257 100% 0 0

Chromosomal Locations for CCDS 22400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71592217 71592504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71594084 71594191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71594669 71594770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71595061 71595201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71596057 71596191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCAGCACCCGCGCCCAGTCTCATCTCGGTCTTCTCCAGCCCGCAAGAGCTGGGCGCGTCGCTGGCGC
AGCTGGTGGCGCAGCGGGCCGCGAGCTGCCTGGAAGGGGACCGTGGCCGCTTCGCGCTTGGTCTGTCAGG
CGGCAGCCTGGTCTCCATGCTAGCCCGAGACCTGCCCGCCGCCGCCGCTCCCGCTGGACCAGCCAGCTTT
GCGCGCTGGACGCTCGGCTTCTGCGACGAGCGCCTCGTGCCCTTCGACCACGCCGAGAGCACGTACGGCC
TCTACCGGACACACCTGCTCTCAAAGCTGCCCATCCCAGACAGCCAGGTCCTTACCATCAATCCTGCCCT
ACCTGTGGAGGATGCTGCAGAGGACTATGCCAGGAAACTGAGACAGGCCTTGCAAGGAGACGCTGTCCCT
GTGTTTGACCTGCTGATCCTGGGAGTGGGCCCTGACGGCCATACCTGTTCGCTCTTCCCTGACCATCCCC
TCCTACAGGAGCGGGAGAAGATCGTGGCTCCCATCAGTGACTCCCCAAAGCCACCACCGCAGAGGGTGAC
CCTAACGCTTCCTGTGCTGAACGCAGCCCAAAGTATCATCTTTGTGGCCACGGGGGAAGGCAAGGCAGCT
GTGCTGAAGCGCATCCTGGAGGACAAGGAGGGCACGTTGCCCGCCGCCTTGGTGCAGCCGCGCACGGGCG
CCCTCTGCTGGTTCCTGGACGAGGCAGCTGCCCGGCTGCTGTCTGTGCCCTTCGAGAAGCATTCCACATT
GTAG

Translation (257 aa):
MAAPAPSLISVFSSPQELGASLAQLVAQRAASCLEGDRGRFALGLSGGSLVSMLARDLPAAAAPAGPASF
ARWTLGFCDERLVPFDHAESTYGLYRTHLLSKLPIPDSQVLTINPALPVEDAAEDYARKLRQALQGDAVP
VFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAAQSIIFVATGEGKAA
VLKRILEDKEGTLPAALVQPRTGALCWFLDEAAARLLSVPFEKHSTL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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