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Report for CCDS29493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29493.1 Public Mus musculus 19 Cdca5 23 108 98 CCDS HistoryNCBI Gene:67849Re-query CCDS DB by CCDS ID:29493.1Re-query CCDS DB by GeneID:67849See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025704.2 ENSMUSP00000025704.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025704.2Link to Ensembl Protein Viewer:ENSMUSP00000025704.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025704Re-query CCDS DB by Protein ID:ENSMUSP00000025704
Original member Current member NCBI NM_026410.3 NP_080686.1 Accepted alive Link to Nucleotide Sequence:NM_026410.3Link to Protein Sequence:NP_080686.1Re-query CCDS DB by Nucleotide ID:NM_026410Re-query CCDS DB by Protein ID:NP_080686Link to BLAST:NP_080686.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080686.1 264 Q9CPY3-1 264 100% 0 0

Chromosomal Locations for CCDS 29493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6085163 6085208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6085398 6085489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6086402 6086467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6086552 6086587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6090051 6090524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6090648 6090728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGCGGAGCGGCGAACACGATCAGGAGGGGCTGCCCAGCGGTCTGGGCCCAGGACTTCACTTACTAAGC
CTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGGAC
AACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAGGTCCCA
GATGTCCACACGGTTCGAAGAAGTCCTAGGATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCA
AGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCT
GTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAG
AAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGAT
CCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGA
GACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAG
GACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGG
TTCCTGAAATCCTGAAATCAGAGCTGGATAAGTGGGCTGTGGCCATGAATGCTGAATTTGAAGCTGCCGA
GCAGTTTGAGCTTCTGATTGAATGA

Translation (264 aa):
MAERRTRSGGAAQRSGPRTSLTKPSKSSKRKSGSDLPNSFSEIWPRTTPAVPVRKAIVLKKIVAHAVEVP
DVHTVRRSPRISFILEKENNPPLKVPTKEDLFKTCSVPGTPSSTPVLYTQNVEPDSGEAELDSRDLEMSQ
KVRRSYSRLQSLGCASTSTPGRRSFFGFEGPDDLPGVSPVVCSKLIETPKVPAKDLVPARTKDLVPDSTK
DLVPARTLPGISPPVVKEKRKKKVPEILKSELDKWAVAMNAEFEAAEQFELLIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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