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Report for CCDS30528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30528.1 Public Mus musculus X Egfl6 23 108 98 CCDS HistoryNCBI Gene:54156Re-query CCDS DB by CCDS ID:30528.1Re-query CCDS DB by GeneID:54156See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000412.2 ENSMUSP00000000412.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000412.2Link to Ensembl Protein Viewer:ENSMUSP00000000412.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000412Re-query CCDS DB by Protein ID:ENSMUSP00000000412
Original member Current member NCBI NM_019397.3 NP_062270.1 Accepted alive Link to Nucleotide Sequence:NM_019397.3Link to Protein Sequence:NP_062270.1Re-query CCDS DB by Nucleotide ID:NM_019397Re-query CCDS DB by Protein ID:NP_062270Link to BLAST:NP_062270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062270.1 550 Q9JJZ5 550 100% 0 0

Chromosomal Locations for CCDS 30528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166523861 166523971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166527314 166527579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166531972 166532073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166536200 166536280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166538414 166538734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166546421 166546543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166548823 166548957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166552425 166552544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166556970 166557089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166562942 166563034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166568409 166568521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166585456 166585523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGCAGCCGCCCTGGGGCCTGGCGCTTCCTCTGCTGCTCCCCTGGGTGACAGGTGGAGTAGGGACCAGTC
CATGGGATTATGGGTTGTCAGCACTGGCACACCAGCCTGGGGTCTGTCAGTATGGAACTAAGATGGCCTG
CTGCTATGGCTGGAAAAGGAACAACAAGGGAGTATGCGAAGCTATGTGTGAGCCCAGGTGCAAGTTCGGT
GAGTGTGTGGGACCGAATAAATGTAGATGCTTTCCAGGATACACCGGGAAGACCTGCACTCAAGATGTGA
ATGAGTGTGGAGTCAAACCCCGGCCGTGCCAGCACAGATGTGTGAATACACATGGTAGCTACAAATGCTT
TTGCCTCAGCGGCCACATGCTTCTACCAGATGCTACATGTTCAAACTCCAGGACGTGTGCCAGACTAAAC
TGCCAGTACGGCTGTGAAGACACAGAGGAAGGGCCACGGTGTGTGTGTCCATCCTCTGGCCTCCGCCTGG
GCCCAAATGGAAGAGTATGCCTAGATATCGATGAATGTGCGTCTAGCAAAGCAGTCTGCCCTTCCAATCG
AAGATGCGTGAACACGTTTGGAAGCTACTACTGCAAATGTCACATTGGTTTTGAGCTGAAATATATCGGT
CGCCGATATGATTGTGTAGATATAAATGAGTGTGCTCTGAATACCCATCCGTGCAGCCCCCATGCCAATT
GCCTCAATACCCGAGGATCCTTCAAGTGCAAATGCAAGCAGGGATATAGGGGCAATGGCCTGCAGTGTTC
TGTGATCCCTGAACATTCTGTGAAGGAAATACTCACAGCACCTGGGACCATCAAAGACCGAATCAAGAAG
TTACTGGCTCACAAGCGCACCATGAAGAAAAAGGTGAAACTAAAAATGGTCACCCCAAGACCCGCCAGTA
CACGTGTCCCTAAGGTCAACTTGCCTTACAGCTCTGAGGAGGGTGTTTCCAGGGGCAGAAACTATGATGG
AGAACAAAAAAAGAAGGAAGAGGGAAAGAGAGAGAGGCTTGAAGAAGAGAAAGGAGAGAAAACCCTGAGG
AACGAGGTGGAACAGGAGCGAACCCTCCGAGGGGATGTATTCTCCCCTAAGGTAAATGAAGCAGAGGATT
TGGATCTGGTCTACGTCCAAAGAAAAGAGCTAAATTCCAAACTGAAGCACAAAGACTTAAACATCTCAGT
TGACTGCAGCTTTGATCTTGGGGTCTGTGATTGGAAACAGGATAGAGAAGATGATTTTGACTGGCATCCT
GCTGATCGAGACAATGATGTTGGTTACTATATGGCAGTCCCTGCACTGGCAGGGCACAAGAAGAATATTG
GCCGATTGAAACTTCTCCTTCCCAACTTGACACCCCAAAGCAACTTCTGTTTGCTCTTTGATTACCGGCT
GGCTGGGGACAAAGTAGGAAAACTTCGAGTGTTCGTGAAAAATAGCAACAATGCCCTGGCATGGGAAGAG
ACTAAAAATGAGGATGGAAGGTGGAGGACAGGAAAAATCCAGTTGTACCAAGGGATCGATACTACCAAAA
GTGTCATTTTTGAAGCAGAGCGTGGCAAAGGCAAAACTGGAGAGATTGCAGTGGATGGAGTCTTGCTGGT
GTCAGGCTTGTGTCCCGATGACTTTTTATCTGTAGAAGGTTGA

Translation (550 aa):
MQPPWGLALPLLLPWVTGGVGTSPWDYGLSALAHQPGVCQYGTKMACCYGWKRNNKGVCEAMCEPRCKFG
ECVGPNKCRCFPGYTGKTCTQDVNECGVKPRPCQHRCVNTHGSYKCFCLSGHMLLPDATCSNSRTCARLN
CQYGCEDTEEGPRCVCPSSGLRLGPNGRVCLDIDECASSKAVCPSNRRCVNTFGSYYCKCHIGFELKYIG
RRYDCVDINECALNTHPCSPHANCLNTRGSFKCKCKQGYRGNGLQCSVIPEHSVKEILTAPGTIKDRIKK
LLAHKRTMKKKVKLKMVTPRPASTRVPKVNLPYSSEEGVSRGRNYDGEQKKKEEGKRERLEEEKGEKTLR
NEVEQERTLRGDVFSPKVNEAEDLDLVYVQRKELNSKLKHKDLNISVDCSFDLGVCDWKQDREDDFDWHP
ADRDNDVGYYMAVPALAGHKKNIGRLKLLLPNLTPQSNFCLLFDYRLAGDKVGKLRVFVKNSNNALAWEE
TKNEDGRWRTGKIQLYQGIDTTKSVIFEAERGKGKTGEIAVDGVLLVSGLCPDDFLSVEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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