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Report for CCDS43221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43221.1 Public Homo sapiens 4 RELL1 24 110 108 CCDS HistoryNCBI Gene:768211Re-query CCDS DB by CCDS ID:43221.1Re-query CCDS DB by GeneID:768211See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314117.8 ENSP00000313385.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314117.8Link to Ensembl Protein Viewer:ENSP00000313385.4Re-query CCDS DB by Nucleotide ID:ENST00000314117Re-query CCDS DB by Protein ID:ENSP00000313385
Original member Current member EBI ENST00000454158.7 ENSP00000398778.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454158.7Link to Ensembl Protein Viewer:ENSP00000398778.2Re-query CCDS DB by Nucleotide ID:ENST00000454158Re-query CCDS DB by Protein ID:ENSP00000398778
Original member Current member NCBI NM_001085399.2 NP_001078868.1 Accepted alive Link to Nucleotide Sequence:NM_001085399.2Link to Protein Sequence:NP_001078868.1Re-query CCDS DB by Nucleotide ID:NM_001085399Re-query CCDS DB by Protein ID:NP_001078868Link to BLAST:NP_001078868.1
Original member Current member NCBI NM_001085400.2 NP_001078869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085400.2Link to Protein Sequence:NP_001078869.1Re-query CCDS DB by Nucleotide ID:NM_001085400Re-query CCDS DB by Protein ID:NP_001078869Link to BLAST:NP_001078869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078868.1 271 Q8IUW5 271 100% 0 0
NP_001078869.1 271 Q8IUW5 271 100% 0 0

Chromosomal Locations for CCDS 43221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 37631388 37631523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37634887 37635123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37638447 37638504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37647368 37647439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37649276 37649500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37686200 37686287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCTCCGCGGGCACTCCCGGGGTCCGCCGTCCTAGCCGCTGCTGTCTTCGTGGGAGGCGCCGTGAGTT
CGCCGCTGGTGGCTCCGGACAATGGGAGCAGCCGCACATTGCACTCCAGAACAGAGACGACCCCGTCGCC
CAGCAACGATACTGGGAATGGACACCCAGAATATATTGCATACGCGCTTGTCCCTGTGTTCTTTATCATG
GGTCTCTTTGGCGTCCTCATTTGCCACCTGCTTAAGAAGAAAGGCTATCGTTGTACAACAGAAGCAGAGC
AAGATATCGAAGAGGAAAAGGTTGAAAAGATAGAATTGAATGACAGTGTGAATGAAAACAGTGACACTGT
TGGGCAAATCGTCCACTACATCATGAAAAATGAAGCGAATGCTGATGTCTTAAAGGCGATGGTAGCAGAT
AACAGCCTGTATGATCCTGAAAGCCCCGTGACCCCCAGCACACCAGGGAGCCCGCCAGTGAGTCCTGGGC
CTTTGTCACCAGGGGGGACGCCAGGGAAGCACGTCTGTGGCCATCATCTGCATACGGTGGGCGGTGTTGT
CGAGAGGGATGTGTGTCATCGGTGTAGGCACAAGCGGTGGCACTTTATAAAGCCCACTAACAAGTCCAGA
GAGAGCAGACCACGGCGCCAAGGCGAGGTCACGGTCCTTTCTGTTGGCAGATTTAGAGTTACAAAAGTGG
AGCACAAGTCAAACCAGAAGGAACGGAGAAGCCTGATGTCTGTTAGTGGGGCTGAAACCGTCAATGGGGA
GGTGCCGGCAACACCTGTGAAGAGAGAACGCAGTGGCACAGAGTAG

Translation (271 aa):
MAPRALPGSAVLAAAVFVGGAVSSPLVAPDNGSSRTLHSRTETTPSPSNDTGNGHPEYIAYALVPVFFIM
GLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENSDTVGQIVHYIMKNEANADVLKAMVAD
NSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKHVCGHHLHTVGGVVERDVCHRCRHKRWHFIKPTNKSR
ESRPRRQGEVTVLSVGRFRVTKVEHKSNQKERRSLMSVSGAETVNGEVPATPVKRERSGTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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