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Report for CCDS53422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53422.1 Public Homo sapiens 1 C1orf226 24 110 108 CCDS HistoryNCBI Gene:400793Re-query CCDS DB by CCDS ID:53422.1Re-query CCDS DB by GeneID:400793See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458626.4 ENSP00000437071.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458626.4Link to Ensembl Protein Viewer:ENSP00000437071.1Re-query CCDS DB by Nucleotide ID:ENST00000458626Re-query CCDS DB by Protein ID:ENSP00000437071
Original member Current member NCBI NM_001085375.2 NP_001078844.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085375.2Link to Protein Sequence:NP_001078844.1Re-query CCDS DB by Nucleotide ID:NM_001085375Re-query CCDS DB by Protein ID:NP_001078844Link to BLAST:NP_001078844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078844.1 272 A1L170-1 272 100% 0 0

Chromosomal Locations for CCDS 53422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162381902 162382218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162383182 162383683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGTTTGAGAATTTGAACACAGCCCTCACTCCAAAGCTCCAGGCCAGCCGCTCCTTCCCCCACTTGTCCA
AGCCCGTGGCCCCCGGCTCTGCCCCTCTGGGCTCTGGTGAGCCTGGGGGGCCAGGACTCTGGGTGGGCAG
CAGCCAGCACCTCAAGAACCTGGGCAAAGCCATGGGGGCCAAAGTGAATGACTTCCTGAGGAGAAAGGAG
CCCTCCAGCCTGGGCAGTGTGGGTGTGACAGAGATCAACAAGACTGCAGGAGCACAGCTGGCCAGTGGGA
CTGACGCGGCTCCAGAGGCTTGGCTAGAGGATGAAAGGTCAGTCCTGCAAGAAACATTTCCTCGGCTGGA
TCCTCCACCTCCCATAACCAGAAAGCGAACCCCTCGGGCCCTGAAGACCACCCAGGACATGCTGATTTCA
TCACAGCCTGTCCTCAGCAGTCTGGAGTATGGGACAGAGCCATCACCTGGGCAGGCCCAGGACTCCGCTC
CCACTGCCCAGCCTGACGTCCCAGCAGACGCTTCACAGCCAGAGGCCACCATGGAAAGAGAAGAGAGAGG
CAAAGTTCTGCCCAATGGAGAGGTTTCCCTGTCAGTACCTGACCTAATCCACAAGGATAGCCAGGACGAA
TCCAAGCTAAAGATGACTGAGTGCAGAAGGGCCTCCTCCCCCAGCCTTATCGAGAGGAATGGCTTCAAAC
TCAGCTTGAGCCCCATCAGCCTGGCTGAGTCCTGGGAGGATGGCAGCCCCCCTCCTCAGGCACGGACCTC
CAGCCTCGACAATGAGGGCCCTCACCCAGACCTGCTGTCCTTTGAATAG

Translation (272 aa):
MFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKE
PSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLIS
SQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDE
SKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTSSLDNEGPHPDLLSFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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