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Report for CCDS29698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29698.1 Public Mus musculus 19 Gda 23 108 98 CCDS HistoryNCBI Gene:14544Re-query CCDS DB by CCDS ID:29698.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29698.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087600.9 ENSMUSP00000084882.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087600.9Link to Ensembl Protein Viewer:ENSMUSP00000084882.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087600Re-query CCDS DB by Protein ID:ENSMUSP00000084882
Original member Current member NCBI NM_010266.2 NP_034396.1 Accepted alive Link to Nucleotide Sequence:NM_010266.2Link to Protein Sequence:NP_034396.1Re-query CCDS DB by Nucleotide ID:NM_010266Re-query CCDS DB by Protein ID:NP_034396Link to BLAST:NP_034396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034396.1 454 Q9R111 454 100% 0 0

Chromosomal Locations for CCDS 29698.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 21395188 21395258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21396033 21396060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21397507 21397637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21400559 21400705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21409872 21409939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21412498 21412595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21414814 21414921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21417000 21417107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21419374 21419401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21422998 21423103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21425531 21425618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21428479 21428650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21434221 21434309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21472368 21472490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGTGTGCGGCTCGGACGCCGCCGCTGGCGCTCGTCTTCCGAGGGACTTTCGTCCACTCCACCTGGACCT
GCCCCATGGAGGTGCTTCGCGATCACCTCCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTCTAGAAGA
ATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCAC
CATGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCA
ACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCAC
TGATGTGGCTGAAGAAGTCTACACTAGAGTTGTTAGGAGAACACTGAAGAACGGCACCACCACGGCTTGC
TACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAGATAAATTTGGGCAGCGAG
CATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTC
AGTCAAGGAGACAGAGAGATTTGTGTCAGAAATGCTGCAAAAGAATTATCCAAGGGTGAAACCCATAGTG
ACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATG
ATCTGTACATCCAGAGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAG
TTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAGACAGTAATGGCACATGGC
TGCTACCTTTCTGAAGAAGAACTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACT
CTAATCTGTCGCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCT
GGGGACAGATGTGGCTGGTGGCTACTCCTATTCCATGCTTGATGCCATCAGAAGAGCAGTCATGGTTTCC
AATGTCCTCTTAATTAATAAGGTAAATGAGAAAAACCTCACCCTCAAAGAAGTCTTCAGACTAGCCACTC
TTGGAGGAAGCCAAGCCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGC
CCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATT
TCTGAGGCTGTTATCCAGAAGTTTCTTTATCTAGGAGACGACCGAAATATTGAGGAGGTTTATGTGGGTG
GAAAGCAGGTCGTTCCATTCTCCAGCTCAGTGTAA

Translation (454 aa):
MCAARTPPLALVFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEESSQQEKLAKEWCFKPCEIRELSH
HEFFMPGLVDTHIHAPQYAFAGSNVDLPLLEWLNKYTFPTEQRFRSTDVAEEVYTRVVRRTLKNGTTTAC
YFGTIHTDSSLILAEITDKFGQRAFVGKVCMDLNDTVPEYKETTEESVKETERFVSEMLQKNYPRVKPIV
TPRFTLSCTETLMSELGNIAKTHDLYIQSHISENREEIEAVKSLYPSYKNYTDVYDKNNLLTNKTVMAHG
CYLSEEELNIFSERGASIAHCPNSNLSLSSGLLNVLEVLKHKVKIGLGTDVAGGYSYSMLDAIRRAVMVS
NVLLINKVNEKNLTLKEVFRLATLGGSQALGLDSEIGNFEVGKEFDALLINPRASDSPIDLFYGDFVGDI
SEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSSSV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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