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Report for CCDS50812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50812.1 Public Mus musculus 2 Spo11 23 108 98 CCDS HistoryNCBI Gene:26972Re-query CCDS DB by CCDS ID:50812.1Re-query CCDS DB by GeneID:26972See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109125.7 ENSMUSP00000104753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109125.7Link to Ensembl Protein Viewer:ENSMUSP00000104753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109125Re-query CCDS DB by Protein ID:ENSMUSP00000104753
Original member NCBI NM_001083960.1 NP_001077429.1 Updated not alive Link to Nucleotide Sequence:NM_001083960.1Link to Protein Sequence:NP_001077429.1Re-query CCDS DB by Nucleotide ID:NM_001083960Re-query CCDS DB by Protein ID:NP_001077429
Current member NCBI NM_001083960.2 NP_001077429.1 Accepted alive Link to Nucleotide Sequence:NM_001083960.2Link to Protein Sequence:NP_001077429.1Re-query CCDS DB by Nucleotide ID:NM_001083960Re-query CCDS DB by Protein ID:NP_001077429Link to BLAST:NP_001077429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077429.1 358 Q9WTK8-4 358 100% 0 0

Chromosomal Locations for CCDS 50812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172979894 172980024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172984016 172984104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172984872 172984938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172985397 172985505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172985904 172985990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172986792 172986828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172987128 172987237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172988931 172989030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172989368 172989405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172989924 172990000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172992046 172992157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172992984 172993103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGTTCGCGCCTATGGGGCCCGAGGCCTCGTTCTTCGACGCCCTGGATCGGCACAGGGCTTCCCTGT
TGGCCATGGTGAAGAGAGGCGCAGGGGAGACCCCTGCCGGGGCCACCCGCGTGGCCTCTAGGTTTGATGA
TTCTGTCGGCCTTCGGATGATACCTCAGTGTACCACAAGAAAAATCAGAAGCGATTCACCAAAATCAGTT
AAGAAATTCGCTCTGATTCTGAAAGTATTGTCCATGATTTATAAATTAATACAGAGCGACACTTATGCAA
CCAAGAGAGACATATACTACACTGACAGCCAGCTCTTTGGGAACCAGGCTGCGGTGGACAGCGCCATCGA
TGACATTTCCTGTATGCTGAAAGTGCCCAGGAGGAGTCTGCACGTGCTATCTACTTCCAAGGGATTGATT
GCTGGCAACTTGAGATACATGGAGGAAGATGGTACCAGAGTCCAGTGTACCTGTAGTGCCACGGCTACTG
CTGTGCCGACTAACATTCAAGGAATGCAGCATCTGATCACAGATGCGAAGTTTCTGTTAATAGTCGAGAA
GGATGCAACATTTCAGCGGCTCCTGGACGACAACTTCTGCAGCAGGATGTCCCCGTGCATCATGGTTACG
GGAAAGGGCGTTCCAGATCTGAACACGAGGCTCTTGGTAAAGAAGCTGTGGGACACCTTTCATATTCCTG
TTTTCACACTGGTCGATGCAGATCCCTACGGCATCGAGATAATGTGCATCTATAAGTACGGATCCATGTC
CATGTCTTTTGAAGCTCACAATCTCACTATCCCAACAATCAGATGGCTTGGTCTCCTCCCTTCTGATATC
CAGAGGTTAAATATACCTAAGGATAGTTTGATCCCACTGACAAAGCATGACCAGATGAAGCTGGACAGCA
TCCTGAAGAGGCCTTACATTACCTACCAGCCCCTCTGGAAAAAAGAGCTGGAGATGATGGCAGACTCTAA
GATGAAGGCAGAGATCCAAGCCTTGACCTTGCTGTCGTCAGACTACCTGTCCAGAGTGTACTTACCCAAC
AAGCTGAGGTTTGGAGGATGGATCTAA

Translation (358 aa):
MAFAPMGPEASFFDALDRHRASLLAMVKRGAGETPAGATRVASRFDDSVGLRMIPQCTTRKIRSDSPKSV
KKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAIDDISCMLKVPRRSLHVLSTSKGLI
AGNLRYMEEDGTRVQCTCSATATAVPTNIQGMQHLITDAKFLLIVEKDATFQRLLDDNFCSRMSPCIMVT
GKGVPDLNTRLLVKKLWDTFHIPVFTLVDADPYGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDI
QRLNIPKDSLIPLTKHDQMKLDSILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPN
KLRFGGWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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