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Report for CCDS50301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50301.1 Public Mus musculus 18 Hmgxb3 23 108 98 CCDS HistoryNCBI Gene:106894Re-query CCDS DB by CCDS ID:50301.1Re-query CCDS DB by GeneID:106894See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091884.5 ENSMUSP00000089498.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091884.5Link to Ensembl Protein Viewer:ENSMUSP00000089498.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091884Re-query CCDS DB by Protein ID:ENSMUSP00000089498
Original member Current member NCBI NM_134134.2 NP_598895.2 Accepted alive Link to Nucleotide Sequence:NM_134134.2Link to Protein Sequence:NP_598895.2Re-query CCDS DB by Nucleotide ID:NM_134134Re-query CCDS DB by Protein ID:NP_598895Link to BLAST:NP_598895.2

Chromosomal Locations for CCDS 50301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61132140 61132595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61133852 61134061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61135471 61135587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61136227 61136360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61137403 61137622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61140791 61140975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61141659 61141790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61146429 61146556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61147247 61147548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61150369 61150518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61152185 61152283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61155028 61155125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61155260 61155432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61157343 61157518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61157615 61157761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61162897 61163028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61165485 61165583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61167196 61167693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61171208 61171382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61172151 61172284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3765 nt):
ATGGATGCCCCGTATGATGGTGCTGAGGTAACTGTCCTGATGGAGGAAATCGAGGAAGCTTATTACACTT
CCCCTGGGCCGCCTAAGAAGAAGAAGAAGTATAAAATACATGGAGAGAAGGCCAAGAAACCCAGGTCTGC
CTACCTACTGTACTACTACGACATCTACTTGAAAGTGCAGCAAGAGCTCCCCCACCTGCCCCAGTCCGAG
ATCAATAAGAAGATTAGTGAGAGCTGGAGGCTCCTCAGCGTGGCCGAGAGAAGTTACTACTTGGAGAAAG
CCAAGCTAGAGAAGGAAGGGTTGGATCCTAACTCTAAGCTCTCTGCACTGACTGCTGTGGTTCCGGACAT
CCCAGGTTTCCGAAAGATCCTTCCCCGATCGGAATACATCATCATTCCCAAGAGCACCCTGCAGGAAGAC
AGGAGCTGCCCGCAGCTAGAGCTCTGTGTGGCTCAGAACCAGATGTCCCCTAAAGGATCTACTCTCATGT
CTAATGCTTCCCCAGATGTAGTAGCCAGCCATGCCGGCATGGCAGAGCAGTGCCTGGCTGTGGAGGCCCT
GGCTGAGGAAGTGGGAGCCCTTCCCCAGCCAGGTACTGTGCAAGAGATTGCCACCTCAGAGATCCTCAGC
CACGATATGCTCTTGGAGGAGGCGTCCTTGGAGGTAGGAGAGAGCCACCAACCTTACCAGACAAGCCTGG
TAATTGAAGAGACTTTAGTAAATGGCTCATCAGACCTCCCCACTGGAAGCCTGGCCGTGCCACATTCCCA
GGTTGGGGAGAGCTTGTCAGTGGTAACAGTCATGAGGGACTCCAGTGAGAGTAGCCCGTCTGCTCCAGCC
ACTCAGTTCATCATGCTGCCTCTGCCTGCTTACTCGGTCGTGGAGAACCCTTCTTCCATCAAGCTGACTA
CAACATACACCCGTCGGGGCCACGGGACATGCACAAGTCCAGGTTGTTCTTTTACCTATGTCACCAGGCA
CAAACCACCTAAGTGCCCTACTTGTGGTAACTTCCTAGGAGGGAAGTGGATCCCAAAGGAAAAGCCAGCC
AAAGTCAAAGTGGAATTGGCTTCGGGTGTCTCCTCCAAAGGTTCTGTGATTAAAAGAAATCAGCAGTCTG
TCACCACTGAGCAAAACCCCTCTAAGGAAAATGCTTCAAAACTGACTCTGGAGAACTCAGAAGCTGAAGT
TCCTGGGAATCGTGGTACAGCGGTAACTAAGATGCCTGTTGTCAAGAGTGGTGCCCAGGCTGAGATCTCT
CTGGGGACAACTGAGAATGACAGTCCTGGACCGGACATACTGCCATCGGCTGAGGGGACCAGCTCCTCCA
GTTTACTCCAAGCTCACAAAAAGTCTCCAGGAGTTGACCTGTTCACCACTGGACCCAAAGCCCCAGAGCT
GAAAGGCAGAGCACGAGGCAAGCCCTCCTTGCTGGCTGCAGCGAGACCTATGAGAGCAATCCTACCAGCC
CCAACAAGTGTTGGGCGGGGCAGCGGCGTGGGACTGCCCAGGGCCAGGCAGGCTTTCCCCCTGGATAAGA
CTCCCTCGGTGAGGACTTGTGGCCTAAAGCCAAGCACGCTGAAACAGCTGGGCCAACCCATCCAGCAGCC
ACCTAGCACTGGTGAAGTAAAGCTATCCAACTGCGCAAGCAGCAGGACCCCACAGTTGAAAATCGTAGAG
GTCAAGCCTGACCTGTTCCCTCCGTATAAGTATAGCTGCACTGTCACGCTGGATTTGGGCCTGGCTACAT
CGAGAGGACGGGGAAAGTGCAAAAATCCCTCCTGTAGCTATGTCTACACCAACCGACACAAACCTCGGAT
TTGTCCCAGCTGTGGTTTCAACCTTGCCAAAGACAGGACTGAGAAAACTCCAAAGGCCATTGAGGCGAGC
TCACCACACCCCGATGTGCCAAGTACCACAGAAGCCCTGAACCCAACCCAGAGGGAGGTCCAGCGTCAGT
CCACACTGCAGCTGCTGCGGAAAGTCCTGCAGATTCCTGAGAACGAGTCAGAGCTGGCTGAGGTCTTTGC
CTTGATTCATGAACTAAATAGCTCTCGACTTATCCTGTCCAACGTGAGTGAGGAGACAGTCACCATCGAG
CAGACCTCTTGGTCGAATTATTATGAGTCTCCATCCACGCAGTGCCTTCTCTGTAGCAGCCCATTGTTCA
AAGGGGGACACAACTCTCTGGCCGGGCCCCAAGAATGCTGGCTCCTGACAGCTAACCGGCTACAGGTGGT
GACTGCCCAGGTGAAGATGTGTCTGAACCCTCATTGTTTGGCCTTGCACAGCTTCACGGACATCTACACA
GGTCTCTTTAATGTGGGGAACAAGTTGCTAGTCAGCCTGGACTTACTTTTCGCAATCCGGAACCAGATTA
AGCTGGGAGAGGACCCCAGAGTGTCTGTCGGTGTTGTGCTGAAGTCTGTGCAGGAACAAACAGAGAAGAC
CCTGACCTCAGAGGAGCTGAGCCAGCTGCAGGAGCTGTTGTGCAATGGCTATTGGGCTTTTGAGTGTCTC
ACTGTTCGCGACTACAATGACATGATCTGTGGCATCTGTGGTGTGGCCCCCAAAGTGGAAATGGCTCAGA
GGAATGAAGAGAATGTGCTGGCCCTGAAGAGTGTGGAGTTTACCTGGCCTGAATTCTTGGGCTCCAGTGA
GGTGAACGTAGAGGACTTTTGGACCACAATGGAGACGGAAGTGATTGAGCAGGTTGCGTTCCCTGCGAGC
ATCCCCATCACCAAGTTCGATGCCTCTGTTATTGCTCCCTTCTTCCCACCACTCATGCGAGGAGCTGTGG
TTGTCAACACTGAGAAAGACAAAACCCAGGACATGCAGCCAGTACCTGGCAACGGCAGTGCCTTGGTGAG
ACTGCTGCAGGAAGGCACCTGCAAGCTTGAGGAGCTTGGCTCCTACAGTGGGGAGGAACTACAGTACCTT
CTGGAGCAGTGCGACATCCCCTTTAGCCCAGAAGACTCGAGGGATCAGCTCTGCTTCTCCTTGTTGGCCC
TCTATGAATCTGTACAGAATGGAGCCAGAGCCAGACCTCCCCCAGCTCATTTCACCGGGGGTAAAATCTA
CAAAGTGTGCCCCCATCAGGTGGTCTGTGGTTCCAAGTATCTTGTTCGAGGTGAAAGTGCCCGTGATCAC
GTGGATCTGCTTGCCTCTTCCCGCCACTGGCCACCTGTCTATGTGGTAGATATGGCCACACCAGTGGCCC
TATGTGCTGACCTCTGCTACCCAGAGCTCACTAGCCAGATGTGGGGGAAGAACCAGGGCTGTTTCTCTAA
CCCTACAGAGCCAGTTGTGAGTGTGTCCTGCCCTGAACTCTTGGACCAGCATTATTCTGTGGATGTGACA
GAGGCTGAAAACTCAGTGCAGCATCCAGTCACCAAGAGTGCGACACGGCGTATTGTCCATGCAAACACAA
AGCCCGATCCCAGTGACCCCAGTGCTGGCCACCGTTCCTTATCACTGTGCCCAGAGCTGGCACCTTATGC
CTCTACCACGGACAGCAAGCTCAGCAGTGTCCGCCAGAGGCCCATCGCCTTTGACAATGCCACCCACTAT
TACCTCTACAACCGCCTCATGGACTTCCTCACCAGCCGAGAGATTGTCAACAGGCAGATCCATGACATTG
TGCAGAGCTGCCAGCCTGGCGAGGTGGTCATTCGCGACACCCTCTATCGCCTTGGGGTTGCCCAGATCAA
GACGGAGGCCCAGGAGGAAGGAGAGGAAGAGGAAGTAGCCTCAGTGGTGGAATAA

Translation (1254 aa):
MDAPYDGAEVTVLMEEIEEAYYTSPGPPKKKKKYKIHGEKAKKPRSAYLLYYYDIYLKVQQELPHLPQSE
INKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSEYIIIPKSTLQED
RSCPQLELCVAQNQMSPKGSTLMSNASPDVVASHAGMAEQCLAVEALAEEVGALPQPGTVQEIATSEILS
HDMLLEEASLEVGESHQPYQTSLVIEETLVNGSSDLPTGSLAVPHSQVGESLSVVTVMRDSSESSPSAPA
TQFIMLPLPAYSVVENPSSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPA
KVKVELASGVSSKGSVIKRNQQSVTTEQNPSKENASKLTLENSEAEVPGNRGTAVTKMPVVKSGAQAEIS
LGTTENDSPGPDILPSAEGTSSSSLLQAHKKSPGVDLFTTGPKAPELKGRARGKPSLLAAARPMRAILPA
PTSVGRGSGVGLPRARQAFPLDKTPSVRTCGLKPSTLKQLGQPIQQPPSTGEVKLSNCASSRTPQLKIVE
VKPDLFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGFNLAKDRTEKTPKAIEAS
SPHPDVPSTTEALNPTQREVQRQSTLQLLRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIE
QTSWSNYYESPSTQCLLCSSPLFKGGHNSLAGPQECWLLTANRLQVVTAQVKMCLNPHCLALHSFTDIYT
GLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSVGVVLKSVQEQTEKTLTSEELSQLQELLCNGYWAFECL
TVRDYNDMICGICGVAPKVEMAQRNEENVLALKSVEFTWPEFLGSSEVNVEDFWTTMETEVIEQVAFPAS
IPITKFDASVIAPFFPPLMRGAVVVNTEKDKTQDMQPVPGNGSALVRLLQEGTCKLEELGSYSGEELQYL
LEQCDIPFSPEDSRDQLCFSLLALYESVQNGARARPPPAHFTGGKIYKVCPHQVVCGSKYLVRGESARDH
VDLLASSRHWPPVYVVDMATPVALCADLCYPELTSQMWGKNQGCFSNPTEPVVSVSCPELLDQHYSVDVT
EAENSVQHPVTKSATRRIVHANTKPDPSDPSAGHRSLSLCPELAPYASTTDSKLSSVRQRPIAFDNATHY
YLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVAQIKTEAQEEGEEEEVASVVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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