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Report for CCDS44306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44306.1 Public Homo sapiens 1 C1orf116 24 110 108 CCDS HistoryNCBI Gene:79098Re-query CCDS DB by CCDS ID:44306.1Re-query CCDS DB by GeneID:79098See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000461135.2 ENSP00000436862.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461135.2Link to Ensembl Protein Viewer:ENSP00000436862.1Re-query CCDS DB by Nucleotide ID:ENST00000461135Re-query CCDS DB by Protein ID:ENSP00000436862
Original member Current member NCBI NM_001083924.2 NP_001077393.1 Accepted alive Link to Nucleotide Sequence:NM_001083924.2Link to Protein Sequence:NP_001077393.1Re-query CCDS DB by Nucleotide ID:NM_001083924Re-query CCDS DB by Protein ID:NP_001077393Link to BLAST:NP_001077393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077393.1 355 Q9BW04-2 355 100% 0 0

Chromosomal Locations for CCDS 44306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 207021958 207023025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGTCCCAAAAAGCCAAGGAAACAGTCTCAACCAGGTACACACAACCCCAGCCTCCTCCTGCAGGGTTGC
CTCAGAATGCAAGAGCTGAAGATGCTCCCCTCTCATCAGGGGAGGACCCAAACAGCCGACTAGCTCCCCT
CACAACCCCTAAGCCCCGGAAGCTGCCACCTAATATTGTTCTGAAGAGCAGCCGAAGCAGTTTCCACAGT
GACCCCCAGCACTGGCTGTCCCGCCACACTGAGGCTGCCCCTGGAGATTCTGGCCTGATCTCCTGTTCAC
TGCAAGAGCAGAGAAAAGCACGTAAAGAAGCTCTAGAGAAGCTGGGGCTACCCCAGGATCAAGATGAGCC
TGGACTCCACTTAAGTAAGCCCACCAGCTCCATCAGACCCAAGGAGACACGGGCCCAGCATCTGTCCCCA
GCTCCAGGTCTGGCTCAGCCTGCAGCTCCAGCCCAGGCCTCAGCAGCTATTCCTGCTGCTGGGAAGGCTC
TGGCTCAAGCTCCGGCTCCAGCTCCAGGTCCAGCTCAGGGACCTTTGCCAATGAAGTCTCCAGCTCCAGG
CAATGTTGCAGCTAGCAAATCTATGCCAATTTCTATCCCTAAGGCCCCAAGGGCAAACAGTGCCCTGACT
CCACCGAAGCCAGAGTCAGGGCTGACTCTCCAGGAGAGCAACACCCCTGGCCTGAGACAGATGAACTTCA
AGTCCAACACTCTGGAGCGCTCAGGCGTGGGACTGAGCAGCTACCTTTCAACTGAGAAAGATGCCAGCCC
CAAAACCAGCACTTCTCTGGGAAAGGGCTCCTTCTTGGACAAGATCTCGCCCAGTGTCTTACGTAATTCT
CGGCCCCGCCCGGCCTCCCTGGGCACGGGGAAAGATTTTGCAGGTATCCAGGTAGGCAAGCTGGCTGACC
TGGAGCAGGAGCAGAGCTCCAAGCGCCTGTCCTACCAAGGACAGAGCCGTGACAAGCTTCCTCGCCCCCC
CTGTGTCAGTGTCAAGATCTCCCCAAAGGGTGTCCCCAATGAACACAGAAGGGAGGCCCTGAAGAAGCTG
GGACTGTTGAAGGAGTAG

Translation (355 aa):
MSQKAKETVSTRYTQPQPPPAGLPQNARAEDAPLSSGEDPNSRLAPLTTPKPRKLPPNIVLKSSRSSFHS
DPQHWLSRHTEAAPGDSGLISCSLQEQRKARKEALEKLGLPQDQDEPGLHLSKPTSSIRPKETRAQHLSP
APGLAQPAAPAQASAAIPAAGKALAQAPAPAPGPAQGPLPMKSPAPGNVAASKSMPISIPKAPRANSALT
PPKPESGLTLQESNTPGLRQMNFKSNTLERSGVGLSSYLSTEKDASPKTSTSLGKGSFLDKISPSVLRNS
RPRPASLGTGKDFAGIQVGKLADLEQEQSSKRLSYQGQSRDKLPRPPCVSVKISPKGVPNEHRREALKKL
GLLKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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