NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31738.1 Public Homo sapiens 12 FAM90A1 24 110 108 CCDS HistoryNCBI Gene:55138Re-query CCDS DB by CCDS ID:31738.1Re-query CCDS DB by GeneID:55138See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31738.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307435.10 ENSP00000307798.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307435.10Link to Ensembl Protein Viewer:ENSP00000307798.6Re-query CCDS DB by Nucleotide ID:ENST00000307435Re-query CCDS DB by Protein ID:ENSP00000307798
Original member Current member EBI ENST00000538603.6 ENSP00000445418.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538603.6Link to Ensembl Protein Viewer:ENSP00000445418.1Re-query CCDS DB by Nucleotide ID:ENST00000538603Re-query CCDS DB by Protein ID:ENSP00000445418
Original member Current member NCBI NM_001319982.2 NP_001306911.1 Accepted alive Link to Nucleotide Sequence:NM_001319982.2Link to Protein Sequence:NP_001306911.1Re-query CCDS DB by Nucleotide ID:NM_001319982Re-query CCDS DB by Protein ID:NP_001306911Link to BLAST:NP_001306911.1
Original member Current member NCBI NM_018088.3 NP_060558.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018088.3Link to Protein Sequence:NP_060558.3Re-query CCDS DB by Nucleotide ID:NM_018088Re-query CCDS DB by Protein ID:NP_060558Link to BLAST:NP_060558.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306911.1 464 Q86YD7 464 100% 0 0
NP_060558.3 464 Q86YD7 464 100% 0 0

Chromosomal Locations for CCDS 31738.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8221822 8222784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8223449 8223557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8224016 8224215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8224710 8224832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGATGGCACGTCGTGACCCCAAACCTGGGGCAAAGAGACTGGTGAGAGCCCAGACCCTCCAGAAGCAGC
GGAGGGCCCCAGTTGGGCCAAGGGCTCCCCCGCCCGATGAAGAAGATCCCAGGCTCAAGTGCAAAAACTG
TGAGGCCTTTGGCCACACGGCCAGAAGTACCAGGTGCCCCATGAAGTGCTGGAAGGCAGCCCTGGTTCCA
CCGAACTTTGGGGAAAAGGAAGGGAAGGAAAACCTGAAACCATGGAAGCCCCAGGTTGAAGCGAACCCTG
GGCCCTTGAACAAGGATAAGGGAGAGAAGGAAGAGAGACCAAGGCCACAAGACCCGCAGAGGAAGGCTCT
CCTCCACATATTTTCCAGGAAACCTCCAGAGAAGCCGCTGCCAAATCAAAAAGGATCCACGGAATCTTCT
GATTATCTGAGGGTTGCAAGCGGGCCAATGCCGGTCCACACAACCAGTAAGAGGCCGCGTGTGGACCCTG
TCCTCTCTGATCGCTCAGCTACCGAAATGTCTGACAGGGGCTCCGTCTTAGCTTCACTGTCTCCCCTCAG
AAAAGCCAGTCTGAGCTCCTCCTCAAGTCTTGGACCAAAGGAAAGACAGACAGGGGCTGCGGCCGACATC
CCTCAGACTGCAGTCAGGCACCAGGGCCCCGAGCCTCTCCTCGTGGTGAAGCCGACACACAGCAGCCCTG
CGGGTGGCTGTCGAGAAGTTCCCCAGGCTGCCTCCAAAACCCACGGCCTGCTCCAGGCCGTCAGCCCCCA
GGCACAAGACAAACGTCCTGCGGTGACCTCACAGCCCTGCCCACCAGCCGCCACACACAGCTTGGGCCTA
GGCTCCAATCTCAGCTTCGGGCCAGGAGCCAAGAGATCTGCCCCGGCTCCGATTCAGGCTTGCCTGAACT
TCCCCAAGAAACCGAGACTGGGTCCCTTCCAGATCCCCGAAAGCGCCATCCAGGGAGGTGAGCTGGGGGC
CCCGGAGAATCTCCAACCTCCGCCAGCCGCAACCGAACTTGGACCACGTACGTCACCCCAGACAGGCACG
AGGACACCCGCCCAGGTGCTTAGCGGCGACCGGCAGCCTCCGCACAGCAGACCTTGCCTGCCTACTGCCC
AGGCCTGCACCATGTCCCATCACCCAGCGGCCAGCCATGATGGGGCCCAGCCTCTCAGAGTGCTCTTTCG
GAGACTGGAAAACGGACGCTGGAGCTCCAGCCTGCTGACGGCCCCCTCATTTCACTCTCCTGAGAAGCCG
GGAGCCTTCCTCGCTCAGAGCCCTCATGTCTCAGAGAAGTCTGAGGGTCCCTGTGTTCGTGTCCCACCAA
GCGTCCTCTATGAGGACCTTCAGGTTCCCTCCTCCTCAGAGGACAGCGATTCTGACCTGGAGTGA

Translation (464 aa):
MMARRDPKPGAKRLVRAQTLQKQRRAPVGPRAPPPDEEDPRLKCKNCEAFGHTARSTRCPMKCWKAALVP
PNFGEKEGKENLKPWKPQVEANPGPLNKDKGEKEERPRPQDPQRKALLHIFSRKPPEKPLPNQKGSTESS
DYLRVASGPMPVHTTSKRPRVDPVLSDRSATEMSDRGSVLASLSPLRKASLSSSSSLGPKERQTGAAADI
PQTAVRHQGPEPLLVVKPTHSSPAGGCREVPQAASKTHGLLQAVSPQAQDKRPAVTSQPCPPAATHSLGL
GSNLSFGPGAKRSAPAPIQACLNFPKKPRLGPFQIPESAIQGGELGAPENLQPPPAATELGPRTSPQTGT
RTPAQVLSGDRQPPHSRPCLPTAQACTMSHHPAASHDGAQPLRVLFRRLENGRWSSSLLTAPSFHSPEKP
GAFLAQSPHVSEKSEGPCVRVPPSVLYEDLQVPSSSEDSDSDLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH