NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16839.1 Public Mus musculus 2 Cd93 23 108 98 CCDS HistoryNCBI Gene:17064Re-query CCDS DB by CCDS ID:16839.1Re-query CCDS DB by GeneID:17064See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099269.3 ENSMUSP00000096876.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099269.3Link to Ensembl Protein Viewer:ENSMUSP00000096876.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099269Re-query CCDS DB by Protein ID:ENSMUSP00000096876
Original member Current member NCBI NM_010740.3 NP_034870.1 Accepted alive Link to Nucleotide Sequence:NM_010740.3Link to Protein Sequence:NP_034870.1Re-query CCDS DB by Nucleotide ID:NM_010740Re-query CCDS DB by Protein ID:NP_034870Link to BLAST:NP_034870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034870.1 644 O89103 644 100% 0 0

Chromosomal Locations for CCDS 16839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148441243 148441267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148441515 148443424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGGCCATCTCAACTGGTTTGTTCCTGCTGCTGGGGCTCCTTGGCCAGCCCTGGGCAGGGGCTGCTGCTG
ATTCACAGGCTGTGGTGTGCGAGGGGACTGCCTGCTATACAGCCCATTGGGGCAAGCTGAGTGCCGCTGA
AGCCCAGCATCGCTGCAATGAGAATGGAGGCAATCTTGCCACCGTGAAGAGTGAGGAGGAGGCCCGGCAT
GTTCAGCAAGCCCTGACTCAGCTCCTGAAGACCAAGGCACCCTTGGAAGCAAAGATGGGCAAATTCTGGA
TCGGGCTCCAGCGAGAGAAGGGCAACTGTACGTACCATGATTTGCCAATGAGGGGCTTCAGCTGGGTGGG
TGGTGGAGAGGACACAGCTTATTCAAACTGGTACAAAGCCAGCAAGAGCTCCTGTATCTTTAAACGCTGT
GTGTCCCTCATACTGGACCTGTCCTTGACACCTCACCCCAGCCATCTGCCCAAGTGGCATGAGAGTCCCT
GTGGGACCCCCGAAGCTCCAGGTAACAGCATTGAAGGTTTCCTGTGCAAGTTCAACTTCAAAGGCATGTG
TAGGCCACTGGCGCTGGGTGGTCCAGGGCGGGTGACCTATACCACCCCTTTCCAGGCCACTACCTCCTCT
CTGGAGGCTGTGCCTTTTGCCTCTGTAGCCAATGTAGCTTGTGGGGATGAAGCTAAGAGTGAAACCCACT
ATTTCCTATGCAATGAAAAGACTCCAGGAATATTTCACTGGGGCAGCTCAGGCCCACTCTGTGTCAGCCC
CAAGTTTGGTTGCAGTTTCAACAACGGGGGCTGCCAGCAGGATTGCTTCGAAGGTGGCGATGGCTCCTTC
CGCTGCGGCTGCCGGCCTGGATTTCGACTGCTGGATGATCTAGTAACTTGTGCCTCCAGGAACCCCTGCA
GCTCAAACCCATGCACAGGAGGTGGCATGTGCCATTCTGTACCACTCAGTGAAAACTACACTTGCCGTTG
TCCCAGCGGCTACCAGCTGGACTCTAGCCAAGTGCACTGTGTGGATATAGATGAGTGCCAGGACTCCCCC
TGTGCCCAGGATTGTGTCAACACTCTAGGGAGCTTCCACTGTGAATGTTGGGTTGGTTACCAACCCAGTG
GCCCCAAGGAAGAGGCCTGTGAAGATGTGGATGAGTGTGCAGCTGCCAACTCGCCCTGTGCCCAAGGCTG
CATCAACACTGATGGCTCTTTCTACTGCTCCTGTAAAGAGGGCTATATTGTGTCTGGGGAAGACAGTACC
CAGTGTGAGGATATAGATGAGTGTTCGGACGCAAGGGGCAATCCATGTGATTCCCTGTGCTTCAACACAG
ATGGTTCCTTCAGGTGTGGCTGCCCGCCAGGCTGGGAGCTGGCTCCCAATGGGGTCTTTTGTAGCAGGGG
CACTGTGTTTTCTGAACTACCAGCCAGGCCTCCCCAAAAGGAAGACAACGATGACAGAAAGGAGAGTACT
ATGCCTCCTACTGAAATGCCCAGTTCTCCTAGTGGCTCTAAGGATGTCTCCAACAGAGCACAGACAACAG
GTCTCTTCGTCCAATCAGATATTCCCACTGCCTCTGTTCCACTAGAAATAGAAATCCCTAGTGAAGTATC
TGATGTCTGGTTCGAGTTGGGCACATACCTCCCCACGACCTCCGGCCACAGCAAGCCGACACATGAAGAT
TCTGTGTCTGCACACAGTGACACCGATGGGCAGAACCTGCTTCTGTTTTACATCCTGGGGACGGTGGTGG
CCATCTCACTCTTGCTGGTGCTGGCCCTAGGGATTCTCATTTATCATAAACGGAGAGCCAAGAAGGAGGA
GATAAAAGAGAAGAAGCCTCAGAATGCAGCCGACAGCTATTCCTGGGTTCCAGAGCGAGCAGAGAGCCAA
GCCCCGGAGAATCAGTACAGCCCAACACCAGGGACAGACTGCTGA

Translation (644 aa):
MAISTGLFLLLGLLGQPWAGAAADSQAVVCEGTACYTAHWGKLSAAEAQHRCNENGGNLATVKSEEEARH
VQQALTQLLKTKAPLEAKMGKFWIGLQREKGNCTYHDLPMRGFSWVGGGEDTAYSNWYKASKSSCIFKRC
VSLILDLSLTPHPSHLPKWHESPCGTPEAPGNSIEGFLCKFNFKGMCRPLALGGPGRVTYTTPFQATTSS
LEAVPFASVANVACGDEAKSETHYFLCNEKTPGIFHWGSSGPLCVSPKFGCSFNNGGCQQDCFEGGDGSF
RCGCRPGFRLLDDLVTCASRNPCSSNPCTGGGMCHSVPLSENYTCRCPSGYQLDSSQVHCVDIDECQDSP
CAQDCVNTLGSFHCECWVGYQPSGPKEEACEDVDECAAANSPCAQGCINTDGSFYCSCKEGYIVSGEDST
QCEDIDECSDARGNPCDSLCFNTDGSFRCGCPPGWELAPNGVFCSRGTVFSELPARPPQKEDNDDRKEST
MPPTEMPSSPSGSKDVSNRAQTTGLFVQSDIPTASVPLEIEIPSEVSDVWFELGTYLPTTSGHSKPTHED
SVSAHSDTDGQNLLLFYILGTVVAISLLLVLALGILIYHKRRAKKEEIKEKKPQNAADSYSWVPERAESQ
APENQYSPTPGTDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH