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Report for CCDS29059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29059.1 Public Mus musculus 18 Gata6 23 108 98 CCDS HistoryNCBI Gene:14465Re-query CCDS DB by CCDS ID:29059.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047762.9 ENSMUSP00000041774.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047762.9Link to Ensembl Protein Viewer:ENSMUSP00000041774.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047762Re-query CCDS DB by Protein ID:ENSMUSP00000041774
Original member Current member NCBI NM_010258.3 NP_034388.2 Accepted alive Link to Nucleotide Sequence:NM_010258.3Link to Protein Sequence:NP_034388.2Re-query CCDS DB by Nucleotide ID:NM_010258Re-query CCDS DB by Protein ID:NP_034388Link to BLAST:NP_034388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034388.2 589 Q61169-1 589 100% 0 0

Chromosomal Locations for CCDS 29059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 11054073 11055189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11059052 11059218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11063018 11063143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11064510 11064597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11064688 11064791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11084315 11084482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGCCTTGACTGACGGCGGCTGGTGCCTGCCAAAGCGTTTCGGGGCTGCTGCTGCGGACGCCGGCGACT
CCGGGCCCTTTCCAGCGCGGGAGCCCTCCTCGCCGCTTTCCCCCATCTCGTCTTCGTCCTCCTCCTGCTC
CCGGGGCGGGGATCGCGGTCCCTGCGGCGCCAGCAACTGCAGGACGCCGCAGCTCGACGCCGAGGCGGTG
GCGGGACCTCCGGGCCGCTCGCTCTTGCTCAGCCCCTACGCCTCGCATCCCTTCGCCGCTGCCCACGGAG
CCGCGGCGCCCGGGGTCGCAGGCCCCGGGAGCGCCCTGTCGACTTGGGAGGACCTGTTGCTCTTCACTGA
CCTCGATCAGGCCGCGACCGCCAGCAAGCTGTTGTGGTCCAGCCGGGGCGCCAAACTGAGCCCCTTCGCG
GCCGAGCAGCCGGAGGAAATGTACCAGACCCTCGCCGCCCTGTCCAGCCAGGGGCCCGCCGCTTACGACG
GCGCGCCCGGCGGCTTCGTGCACTCCGCAGCGGCGGCGGCCGCTGCCGCCGCGGCAGCCAGCTCCCCGGT
CTACGTGCCCACCACGCGCGTGGGCTCCATGCTGTCCGGCCTGCCCTACCTTCAAGGGGCGGGCAGCGGG
CCCAGCAATCACGCGGGCGGAGCGGGTGCCCACCCAGGCTGGTCCCAGGCCTCCGCCGACAGCCCCCCGT
ATGGCGGGGGTGGCGCAGCCGGCGGCGGCGCGGCCGGACCTGGAGGTGCGGGATCGGCTACGGCCCACGC
CTCTGCACGCTTTCCCTACTCGCCCAGCCCGCCCATGGCCAACGGCGCCGCGCGAGACCCCGGGGGCTAC
GTGGCTGCGGGCGGCACGGGCGCAGGCAGTGTGAGTGGAGGTGGCGGCAGCCTGGCGGCCATGGGTGGCC
GGGAGCACCAGTACAGCTCGCTGTCCGCAGCTCGGCCGCTGAACGGAACGTACCACCACCACCATCACCA
TCACCCGACCTACTCGCCCTACATGGCCGCACCGCTGACTCCTGCCTGGCCAGCAGGACCCTTCGAAACG
CCGGTGCTCCACAGCTTACAGGGCCGCGCGGGAGCTCCACTCCCGGTGCCACGGGGCCCCAGCACAGACC
TGTTGGAGGACCTGTCGGAGAGCCGCGAGTGCGTGAACTGCGGCTCCATCCAGACGCCACTGTGGAGACG
AGACGGCACCGGTCATTACCTGTGCAATGCATGCGGTCTCTACAGCAAGATGAATGGCCTCAGCAGGCCC
CTCATCAAGCCACAGAAGCGCGTGCCTTCATCACGGCGGCTTGGACTGTCCTGTGCCAACTGTCACACCA
CAACCACTACCTTATGGCGTAGAAATGCTGAGGGTGAGCCTGTGTGCAATGCTTGCGGGCTCTATATGAA
ACTCCATGGGGTGCCTCGACCACTTGCTATGAAAAAAGAAGGAATTCAAACCAGGAAACGAAAACCTAAA
AATATAAATAAGTCAAAAGCTTGCTCCGGTAACAGCAGTGGCTCTGTCCCTATGACTCCTACTTCCTCTT
CTTCTAATTCAGATGACTGCACCAAAAATACTTCTCCTTCTACACAAGCGACCACCTCAGGGGTAGGGGC
ATCAGTGATGTCTGCAGTGGGAGAAAACGCCAACCCCGAGAACAGTGACCTCAAGTATTCAGGTCAAGAC
GGCCTCTACATAGGTGTCAGTCTGTCCTCCCCTGCCGAAGTCACATCCTCCGTGCGACAGGATTCTTGGT
GTGCTCTGGCCCTGGCCTGA

Translation (589 aa):
MALTDGGWCLPKRFGAAAADAGDSGPFPAREPSSPLSPISSSSSSCSRGGDRGPCGASNCRTPQLDAEAV
AGPPGRSLLLSPYASHPFAAAHGAAAPGVAGPGSALSTWEDLLLFTDLDQAATASKLLWSSRGAKLSPFA
AEQPEEMYQTLAALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLSGLPYLQGAGSG
PSNHAGGAGAHPGWSQASADSPPYGGGGAAGGGAAGPGGAGSATAHASARFPYSPSPPMANGAARDPGGY
VAAGGTGAGSVSGGGGSLAAMGGREHQYSSLSAARPLNGTYHHHHHHHPTYSPYMAAPLTPAWPAGPFET
PVLHSLQGRAGAPLPVPRGPSTDLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRP
LIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPK
NINKSKACSGNSSGSVPMTPTSSSSNSDDCTKNTSPSTQATTSGVGASVMSAVGENANPENSDLKYSGQD
GLYIGVSLSSPAEVTSSVRQDSWCALALA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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