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Report for CCDS30288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30288.1 Public Mus musculus X Vsig4 23 108 98 CCDS HistoryNCBI Gene:278180Re-query CCDS DB by CCDS ID:30288.1Re-query CCDS DB by GeneID:278180See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050707.2 ENSMUSP00000051521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050707.2Link to Ensembl Protein Viewer:ENSMUSP00000051521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050707Re-query CCDS DB by Protein ID:ENSMUSP00000051521
Original member Current member NCBI NM_177789.5 NP_808457.1 Accepted alive Link to Nucleotide Sequence:NM_177789.5Link to Protein Sequence:NP_808457.1Re-query CCDS DB by Nucleotide ID:NM_177789Re-query CCDS DB by Protein ID:NP_808457Link to BLAST:NP_808457.1

Chromosomal Locations for CCDS 30288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 96247722 96247890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96248214 96248235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96249875 96249979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96269055 96269132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96269556 96269612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96290490 96290846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 96293314 96293368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGAGATCTCATCAGGCTTGCTGTTCCTGGGCCACCTAATAGTGCTCACCTATGGCCACCCCACCCTAA
AAACACCTGAGAGTGTGACAGGGACCTGGAAAGGAGATGTGAAGATTCAGTGCATCTATGATCCCCTGAG
AGGCTACAGGCAAGTTTTGGTGAAATGGCTGGTAAGACACGGCTCTGACTCCGTCACCATCTTCCTACGT
GACTCCACTGGAGACCATATCCAGCAGGCAAAGTACAGAGGCCGCCTGAAAGTGAGCCACAAAGTTCCAG
GAGATGTGTCCCTCCAAATAAATACCCTGCAGATGGATGACAGGAATCACTATACATGTGAGGTCACCTG
GCAGACTCCTGATGGAAACCAAGTAATAAGAGATAAGATCATTGAGCTCCGTGTTCGGAAATATAATCCA
CCTAGAATCAATACTGAAGCACCTACAACCCTGCACTCCTCTTTGGAAGCAACAACTATAATGAGTTCAA
CCTCTGACTTGACCACTAATGGGACTGGAAAACTTGAGGAGACCATTGCTGGTTCAGGGAGGAACCTGCC
AATCTTTGCCATAATCTTCATCATCTCCCTTTGCTGCATAGTAGCTGTCACCATACCTTATATCTTGTTC
CGCTGCAGGACATTCCAACAAGAGTATGTCTATGGAGTGAGCAGGGTGTTTGCCAGGAAGACAAGCAACT
CTGAAGAAACCACAAGGGTGACTACCATCGCAACTGATGAACCAGATTCCCAGGCTCTGATTAGTGACTA
CTCTGATGATCCTTGCCTCAGCCAGGAGTACCAAATAACCATCAGATCAACAATGTCTATTCCTGCCTGC
TGA

Translation (280 aa):
MEISSGLLFLGHLIVLTYGHPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLR
DSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRKYNP
PRINTEAPTTLHSSLEATTIMSSTSDLTTNGTGKLEETIAGSGRNLPIFAIIFIISLCCIVAVTIPYILF
RCRTFQQEYVYGVSRVFARKTSNSEETTRVTTIATDEPDSQALISDYSDDPCLSQEYQITIRSTMSIPAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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