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Report for CCDS31358.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31358.2 Public Homo sapiens 11 OR51E1 24 110 108 CCDS HistoryNCBI Gene:143503Re-query CCDS DB by CCDS ID:31358.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31358.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data. Two possible start codons are present in this update, with the downstream start codon having a stronger Kozak signal. Due to leaky scanning by ribosomes, it is possible that some ribosomes may initiate translation from the upstream AUG codon while others start from the downstream AUG. Translation initiation from the downstream AUG would result in a protein that is 1 aa shorter at the N-terminus.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31358.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396952.6 ENSP00000380155.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396952.6Link to Ensembl Protein Viewer:ENSP00000380155.5Re-query CCDS DB by Nucleotide ID:ENST00000396952Re-query CCDS DB by Protein ID:ENSP00000380155
Original member Current member NCBI NM_152430.4 NP_689643.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152430.4Link to Protein Sequence:NP_689643.2Re-query CCDS DB by Nucleotide ID:NM_152430Re-query CCDS DB by Protein ID:NP_689643Link to BLAST:NP_689643.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689643.2 318 Q8TCB6 318 100% 0 0

Chromosomal Locations for CCDS 31358.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4652527 4653483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGATGGTGGATCCCAATGGCAATGAATCCAGTGCTACATACTTCATCCTAATAGGCCTCCCTGGTTTAG
AAGAGGCTCAGTTCTGGTTGGCCTTCCCATTGTGCTCCCTCTACCTTATTGCTGTGCTAGGTAACTTGAC
AATCATCTACATTGTGCGGACTGAGCACAGCCTGCATGAGCCCATGTATATATTTCTTTGCATGCTTTCA
GGCATTGACATCCTCATCTCCACCTCATCCATGCCCAAAATGCTGGCCATCTTCTGGTTCAATTCCACTA
CCATCCAGTTTGATGCTTGTCTGCTACAGATGTTTGCCATCCACTCCTTATCTGGCATGGAATCCACAGT
GCTGCTGGCCATGGCTTTTGACCGCTATGTGGCCATCTGTCACCCACTGCGCCATGCCACAGTACTTACG
TTGCCTCGTGTCACCAAAATTGGTGTGGCTGCTGTGGTGCGGGGGGCTGCACTGATGGCACCCCTTCCTG
TCTTCATCAAGCAGCTGCCCTTCTGCCGCTCCAATATCCTTTCCCATTCCTACTGCCTACACCAAGATGT
CATGAAGCTGGCCTGTGATGATATCCGGGTCAATGTCGTCTATGGCCTTATCGTCATCATCTCCGCCATT
GGCCTGGACTCACTTCTCATCTCCTTCTCATATCTGCTTATTCTTAAGACTGTGTTGGGCTTGACACGTG
AAGCCCAGGCCAAGGCATTTGGCACTTGCGTCTCTCATGTGTGTGCTGTGTTCATATTCTATGTACCTTT
CATTGGATTGTCCATGGTGCATCGCTTTAGCAAGCGGCGTGACTCTCCGCTGCCCGTCATCTTGGCCAAT
ATCTATCTGCTGGTTCCTCCTGTGCTCAACCCAATTGTCTATGGAGTGAAGACAAAGGAGATTCGACAGC
GCATCCTTCGACTTTTCCATGTGGCCACACACGCTTCAGAGCCCTAG

Translation (318 aa):
MMVDPNGNESSATYFILIGLPGLEEAQFWLAFPLCSLYLIAVLGNLTIIYIVRTEHSLHEPMYIFLCMLS
GIDILISTSSMPKMLAIFWFNSTTIQFDACLLQMFAIHSLSGMESTVLLAMAFDRYVAICHPLRHATVLT
LPRVTKIGVAAVVRGAALMAPLPVFIKQLPFCRSNILSHSYCLHQDVMKLACDDIRVNVVYGLIVIISAI
GLDSLLISFSYLLILKTVLGLTREAQAKAFGTCVSHVCAVFIFYVPFIGLSMVHRFSKRRDSPLPVILAN
IYLLVPPVLNPIVYGVKTKEIRQRILRLFHVATHASEP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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