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Report for CCDS29859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29859.1 Public Mus musculus 19 Lbx1 23 108 98 CCDS HistoryNCBI Gene:16814Re-query CCDS DB by CCDS ID:29859.1Re-query CCDS DB by GeneID:16814See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099401.5 ENSMUSP00000096997.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099401.5Link to Ensembl Protein Viewer:ENSMUSP00000096997.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099401Re-query CCDS DB by Protein ID:ENSMUSP00000096997
Original member Current member NCBI NM_010691.6 NP_034821.2 Accepted alive Link to Nucleotide Sequence:NM_010691.6Link to Protein Sequence:NP_034821.2Re-query CCDS DB by Nucleotide ID:NM_010691Re-query CCDS DB by Protein ID:NP_034821Link to BLAST:NP_034821.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034821.2 282 P52955 282 100% 0 0

Chromosomal Locations for CCDS 29859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45233734 45234257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45234903 45235227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGACTTCCAAGGAGGACGGCAAGGCGGCGCCAGGGGAGGAGCGGCGACGCAGCCCTCTGGACCACCTGC
CGCCGCCCGCCAACTCCAACAAGCCGCTGACGCCGTTCAGCATCGAGGACATCCTCAACAAGCCGTCCGT
GCGGAGAAGTTACTCGCTGTGTGGGGCGGCGCACCTGCTGGCGGCCGCGGACAAGCACGCGCCGGGCGGC
TTGCCCCTGGCGGGCCGCGCTCTGCTCTCGCAGACCTCGCCTCTCTGCGCCTTGGAGGAGCTCGCCAGCA
AGACCTTTAAGGGGCTGGAGGTCAGCGTCCTGCAGGCAGCCGAAGGCCGCGATGGGATGACCATCTTTGG
GCAGAGGCAGACGCCCAAGAAACGGCGAAAATCACGCACGGCCTTCACCAACCACCAGATCTACGAGTTG
GAGAAACGCTTTCTATACCAGAAGTACCTGTCCCCGGCAGATCGCGACCAAATTGCGCAGCAGCTGGGCC
TCACCAATGCACAGGTCATCACCTGGTTCCAGAACCGGCGCGCCAAGCTCAAGCGGGACCTAGAGGAGAT
GAAGGCCGACGTGGAGTCTGCCAAGAAACTGGGCCCCAGCGGGCAGATGGACATCGTGGCGCTGGCCGAA
CTCGAGCAGAACTCGGAGGCTTCGGGCGGTGGCGGCGGCGGTGGCTGCGGCAGGGCTAAGTCTAGGCCGG
GTTCTCCTGCGCTGCCCCCAGGCGCCCCGCAGGCCCCGGGCGGAGGACCCTTGCAGCTCTCGCCCGCCTC
TCCACTCACGGACCAGCGGGCCAGCAGCCAGGACTGCTCAGAGGATGAGGAAGATGAAGAGATCGACGTG
GACGATTGA

Translation (282 aa):
MTSKEDGKAAPGEERRRSPLDHLPPPANSNKPLTPFSIEDILNKPSVRRSYSLCGAAHLLAAADKHAPGG
LPLAGRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYEL
EKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPSGQMDIVALAE
LEQNSEASGGGGGGGCGRAKSRPGSPALPPGAPQAPGGGPLQLSPASPLTDQRASSQDCSEDEEDEEIDV
DD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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