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Report for CCDS75332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75332.1 Public Homo sapiens 5 PCDHGB2 24 110 108 CCDS HistoryNCBI Gene:56103Re-query CCDS DB by CCDS ID:75332.1Re-query CCDS DB by GeneID:56103See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622527.1 ENSP00000481512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622527.1Link to Ensembl Protein Viewer:ENSP00000481512.1Re-query CCDS DB by Nucleotide ID:ENST00000622527Re-query CCDS DB by Protein ID:ENSP00000481512
Original member Current member NCBI NM_032096.1 NP_115267.1 Accepted alive Link to Nucleotide Sequence:NM_032096.1Link to Protein Sequence:NP_115267.1Re-query CCDS DB by Nucleotide ID:NM_032096Re-query CCDS DB by Protein ID:NP_115267Link to BLAST:NP_115267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115267.1 811 Q9Y5G2-2 811 100% 0 0

Chromosomal Locations for CCDS 75332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141360136 141362571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGAAAGCGAGCTCAGGGAGGTGCGGGCTGGTGCGGTGGCTGCAGGTACTGTTGCCCTTCCTGTTGTCTT
TG
TTCCCCGGGGCTCTCCCAGTCCAGATCCGCTATTCAATTCCAGAGGAGCTGGCCAAAAACTCGGTCGT
A
GGAAACCTCGCCAAGGATCTGGGGCTCAGCGTCCGGGACTTGCCAGCCCGGAAGCTGCGGGTTAGCGCG
GAG
AAGGAATATTTCACAGTAAACCCAGAAAGCGGAGACTTACTTGTGAGTGACAGAATAGACCGAGAAC
AG
ATATGCGGGAAGCAGCCTCTGTGTGTTCTGGATTTCGATACTGTCGCTGAAAATCCACTAAATATTTT
C
TACATAGCAGTAATTGTGCAGGATATAAATGATAATACCCCGCTATTCAAACAGACTAAGATTAATTTA
AAA
ATTGGCGAATCCACTAAGCCAGGTACAACATTTCCACTTGACCCAGCCCTGGATTCAGATGTTGGTC
CT
AACTCACTACAAAGATACCACCTTAATGACAACGAGTACTTTGATCTCGCTGAGAAACAGACTCCAGA
T
GGTCGTAAATATCCTGAGTTGATTCTAAAACACTCTCTGGACAGAGAAGAGCACAGTTTACATCAATTG
GTC
CTCACAGCTGTGGATGGCGGAGACCCACCTCAAAGTGGCACGACCCAAATCCGAATCAAAGTCACGG
AT
GCCAACGATAACCCTCCAGTGTTCAGCCAGGACGTGTACAGGGTCACCCTGAGGGAGGACGTGCCGCC
G
GGCTTCTTTGTGCTTCAAGTGACAGCCACCGACCGGGATGAAGGCATAAACGCAGAGATCACCTACTCC
TTT
CATAATGTGGACGAACAAGTGAAACACTTTTTCAACTTAAATGAAAAAACAGGAGAAATCACGACAA
AG
GATGATTTGGATTTTGAGATTGCAAGTAGTTACACTCTGAGTATCGAAGCAAAAGATCCTGGAGATCT
A
GCAGCCCACTGCAGTATCCAAGTTGAAATTCTTGATGACAACGATTGTGCACCTGAAGTTATTGTGACT
TCA
GTATCTACTCCCCTACCGGAGGATTCGCCACCAGGAACAGTGATCGCCTTGATAAAAACGAGAGACA
GA
GACTCTGGAGAAAATGGAGAAGTTTACTGCCAAGTGTTGGGAAATGCCAAGTTTATTTTGAAATCTTC
C
TCAAAGAACTATTACAAACTAGTGACAGACGGCGCTCTGGACCGGGAGGAGATCCCAGAATACAATCTC
ACC
ATCACAGCCACCGACGGGGGCAAGCCGCCCCTCTCCTCCAGCATAATTGTCACCCTGCACATCTCCG
AC
GTCAACGATAATGCCCCAGTTTTCCAACAGACTTCCTACATGGTTCACGTGGCAGAGAACAATCCTCC
T
GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTTGGGCCCCAGTGGCCAAGTTTCCTACTCC
ATC
GTAGCGAGCGACCTGAAGCCGCGGGAGATTTTATCCTACGTGTCCGTGAGCGCGCAGAGCGGGGTGG
TG
TTCGCGCAGCGCGCCTTCGATCATGAGCAGCTGCGCGCCTTCGAGCTCACACTGCAGGCCCGCGACCA
G
GGCTCGCCCGCGCTCAGCGCCAACGTGAGCCTGCGCGTGTTAGTGGGCGACCTCAATGACAATGCGCCA
CGG
GTGCTGTACCCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGCGCCGCAGAGC
CC
GGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACACAACGCTTGGCTGTCCTACCA
C
GTGCTGCAGGCCAGCGAGCCCGGGCTCTTCAGCCTGGGGTTGCGCACGGGTGAGGTGCGCACAGCGCGT
GCC
TTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGGTCGCTGTGCGTGATGGAGGACAGCCGCCAC
TC
TCCGCTACGGCCACGCTGCACCTAATCTTCGCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGA
C
CGCCGGGAGCCCTCTGACCCCCAGGCAAAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCA
GTG
CTCTTCTTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTGCGACTCTCTTCCAGGTCAGATGCTT
GG
GACTGTTTTCAGCCTGGTCTCAGCTCCAAGCCTGGACCTGGGGTTCTCCCCAATTACAGTGAGGGTAC
A
TTGCCCTATTCCTACAACCTGTGTGTTGCCTCACAATCAGCCAAGACAGAGTTCAATTTTCTGAACATA
ACC
CCGGAATTGGTTCCCGCGCAAGATCTCGTCTGTGACAATGCCTCTTGGGAACAAAATACAAATCATG
GA
GCCGCTGGGGTCCCTTTTGCCTCAGATACTATTTTGAAGGTGAGCTTTAATTAA


Translation (811 aa):
MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSA
E
KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINL
K
IGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQL
V
LTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYS
F
HNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVT
S
VSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
T
ITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYS
I
VASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP
R
VLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTAR
A
LGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALIS
V
LFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNI
T
PELVPAQDLVCDNASWEQNTNHGAAGVPFASDTILKVSFN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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