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Report for CCDS17632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17632.1 Public Mus musculus 3 Bola1 23 108 98 CCDS HistoryNCBI Gene:69168Re-query CCDS DB by CCDS ID:17632.1Re-query CCDS DB by GeneID:69168See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016087.3 ENSMUSP00000016087.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016087.3Link to Ensembl Protein Viewer:ENSMUSP00000016087.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000016087Re-query CCDS DB by Protein ID:ENSMUSP00000016087
Original member Current member EBI ENSMUST00000107099.7 ENSMUSP00000102716.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107099.7Link to Ensembl Protein Viewer:ENSMUSP00000102716.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107099Re-query CCDS DB by Protein ID:ENSMUSP00000102716
Original member Current member EBI ENSMUST00000177442.1 ENSMUSP00000134765.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177442.1Link to Ensembl Protein Viewer:ENSMUSP00000134765.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177442Re-query CCDS DB by Protein ID:ENSMUSP00000134765
Original member Current member NCBI NM_026975.2 NP_081251.1 Accepted alive Link to Nucleotide Sequence:NM_026975.2Link to Protein Sequence:NP_081251.1Re-query CCDS DB by Nucleotide ID:NM_026975Re-query CCDS DB by Protein ID:NP_081251Link to BLAST:NP_081251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081251.1 137 Q9D8S9 137 100% 0 0

Chromosomal Locations for CCDS 17632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96196863 96197276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGCTAAGTGCGCGATCGGCCCAGTGCATGGTCTCCATGGCCACGCGCTCGTGTGTATCGCGGGGCAGCG
CGGGATCTGCGGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGA
GGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTG
GCGGTGGTGAGCTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGT
CGGAGGAGCTGGCTGGACCGGTACATGCCCTGGCCATCCAGGCGAAGACCCCCGCCCAGTGGAGAGAAAA
CCCACAGTTGGACATTAGTCCCCCCTGCCTAGGTGGGAGCAAGAAAACTCGAGGGACCTCTTAA

Translation (137 aa):
MLSARSAQCMVSMATRSCVSRGSAGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRV
AVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQWRENPQLDISPPCLGGSKKTRGTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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