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Report for CCDS24967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24967.1 Public Mus musculus 11 Scimp 23 108 98 CCDS HistoryNCBI Gene:327957Re-query CCDS DB by CCDS ID:24967.1Re-query CCDS DB by GeneID:327957See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108534.8 ENSMUSP00000104174.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108534.8Link to Ensembl Protein Viewer:ENSMUSP00000104174.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108534Re-query CCDS DB by Protein ID:ENSMUSP00000104174
Original member Current member NCBI NM_001045526.2 NP_001038991.1 Accepted alive Link to Nucleotide Sequence:NM_001045526.2Link to Protein Sequence:NP_001038991.1Re-query CCDS DB by Nucleotide ID:NM_001045526Re-query CCDS DB by Protein ID:NP_001038991Link to BLAST:NP_001038991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038991.1 150 Q3UU41 150 100% 0 0

Chromosomal Locations for CCDS 24967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70791436 70791638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70793775 70793848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70798013 70798076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70800690 70800801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGAGTTGGTGGAGGGACAACTTCTGGATCATCTTAGCTATGTCCATCATCTTCATCTCCCTGGTCCTGG
GTCTCATCCTGTACTGTGTCTGCAGGTGGCAGCTTAGACAAGGCAGGAACTGGGAAATTGCTAAGCCCTC
AAAACAGGATGGAAGAGATGAAGAAAAGATGTATGAGAATGTTCTTAATTCTTCACCAGGCCAGTTACCT
GCTCTGCCACCCAGGGGTTCACCTTTTCCAGGAGACCTAGCCCCACAGGAAGCTCCAAGACAACCCTCAG
CTTGGTACTCATCAGTGAAGAAAGTTAGGAACAAGAAGGTCTTTGCTATCTCGGGCTCCACCGAGCCAGA
AAATGATTATGATGATGTTGAGATTCCAGCAACCACCGAAACCCAGCACTCTAAAACCACACCTTTTTGG
CAAGCTGAAGTGGGTTTACACAGCTCGTTTTAG

Translation (150 aa):
MSWWRDNFWIILAMSIIFISLVLGLILYCVCRWQLRQGRNWEIAKPSKQDGRDEEKMYENVLNSSPGQLP
ALPPRGSPFPGDLAPQEAPRQPSAWYSSVKKVRNKKVFAISGSTEPENDYDDVEIPATTETQHSKTTPFW
QAEVGLHSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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