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Report for CCDS18979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18979.1 Public Mus musculus 4 Vamp3 23 108 98 CCDS HistoryNCBI Gene:22319Re-query CCDS DB by CCDS ID:18979.1Re-query CCDS DB by GeneID:22319See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030797.3 ENSMUSP00000030797.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030797.3Link to Ensembl Protein Viewer:ENSMUSP00000030797.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030797Re-query CCDS DB by Protein ID:ENSMUSP00000030797
Original member Current member NCBI NM_009498.4 NP_033524.1 Accepted alive Link to Nucleotide Sequence:NM_009498.4Link to Protein Sequence:NP_033524.1Re-query CCDS DB by Nucleotide ID:NM_009498Re-query CCDS DB by Protein ID:NP_033524Link to BLAST:NP_033524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033524.1 103 P63024 103 100% 0 0

Chromosomal Locations for CCDS 18979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151049030 151049046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151049995 151050046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151050917 151051075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151056162 151056243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151057874 151057875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGTCTACAGGTGTGCCTTCGGGGTCAAGTGCTGCCACTGGCAGTAATCGAAGACTCCAGCAGACACAAA
ATCAAGTAGATGAGGTGGTTGACATCATGAGAGTCAATGTGGATAAGGTGTTAGAAAGAGACCAGAAGCT
CTCGGAGCTAGATGACCGCGCAGATGCACTGCAGGCAGGTGCCTCGCAGTTTGAAACAAGTGCTGCCAAG
TTGAAGAGAAAGTATTGGTGGAAGAACTGCAAGATGTGGGCGATAGGGATCAGTGTCCTGGTGATCATTG
TCATCATCATCATCGTGTGGTGTGTCTCTTAA

Translation (103 aa):
MSTGVPSGSSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK
LKRKYWWKNCKMWAIGISVLVIIVIIIIVWCVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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