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Report for CCDS27105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27105.1 Public Mus musculus 14 Cmtm5 23 108 98 CCDS HistoryNCBI Gene:67272Re-query CCDS DB by CCDS ID:27105.1Re-query CCDS DB by GeneID:67272See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037814.7 ENSMUSP00000036138.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037814.7Link to Ensembl Protein Viewer:ENSMUSP00000036138.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037814Re-query CCDS DB by Protein ID:ENSMUSP00000036138
Original member Current member NCBI NM_026066.2 NP_080342.1 Accepted alive Link to Nucleotide Sequence:NM_026066.2Link to Protein Sequence:NP_080342.1Re-query CCDS DB by Nucleotide ID:NM_026066Re-query CCDS DB by Protein ID:NP_080342Link to BLAST:NP_080342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080342.1 156 Q9D6G9-1 156 100% 0 0

Chromosomal Locations for CCDS 27105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54936658 54936783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54937895 54938047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54938582 54938674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54938852 54938936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54939033 54939046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGTTCAGTGCTTGGGATCGCCGGGAACGGCCCCCAGAGGAAGGAGCAGCTGCAGGGCTCCAGGGCTTCG
GAGTGGACAAGACCTTCCTGTCTTCCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGCCCTGACCTTCAT
CATCTTCATTTGCTTCACGGCCTCCATCTCTGCCTACATGGCTGCAGCGTTGCTAGAGTTCCTCATCACA
CTGGCCTTCCTCTTCCTCTGCGCCACGCAGTACTACCAGCGCTTCGATAGGCTCAACTGGCCTTGTCTGG
ACTTCCTCCGGTGTCTCAGCGCCATCGTCATCTTCCTGGTGGTCTCCTTTGCTGCTGTGACCTCGAGGGA
GGGAGCTGCCATTGCTGCTTTTGTTTTTGGCATCATCCTGGTCTCCGTCTTTGCCTATGATGCATTCAAG
ATCTACCGAACTGAGCTGATGCCCAGTACCACTGAGGGGGACCAGCAGTGA

Translation (156 aa):
MFSAWDRRERPPEEGAAAGLQGFGVDKTFLSSLKGILLETELALTFIIFICFTASISAYMAAALLEFLIT
LAFLFLCATQYYQRFDRLNWPCLDFLRCLSAIVIFLVVSFAAVTSREGAAIAAFVFGIILVSVFAYDAFK
IYRTELMPSTTEGDQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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