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Report for CCDS19098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19098.1 Public Mus musculus 5 Speer4f1 23 108 98 CCDS HistoryNCBI Gene:70935Re-query CCDS DB by CCDS ID:19098.1Re-query CCDS DB by GeneID:70935See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076099.3 ENSMUSP00000075467.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076099.3Link to Ensembl Protein Viewer:ENSMUSP00000075467.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000076099Re-query CCDS DB by Protein ID:ENSMUSP00000075467
Original member Current member NCBI NM_027609.2 NP_081885.1 Accepted alive Link to Nucleotide Sequence:NM_027609.2Link to Protein Sequence:NP_081885.1Re-query CCDS DB by Nucleotide ID:NM_027609Re-query CCDS DB by Protein ID:NP_081885Link to BLAST:NP_081885.1

Chromosomal Locations for CCDS 19098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 17476126 17476264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17477260 17477413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17478633 17478764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17479401 17479581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17480315 17480485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGACCATGTGTGTCCGACTCAGGAGACTTTTTCAGAGAGTCAATGTGGATGGGAGAGAGACAAGAGAGG
GGAGCATGGATGCTGGCCTTCCATGTGAGAGGAATGAAGGACGAAGGAGGTGGACTTGGCGAATGTGGAT
GGCTCACAGACAGACATCATCCCCTGTACCTGTCACAAGCAATCAGTTTGAGAAGGAAGAGGAGGAGCTG
ATGGAAGAGATCCAGCTCATTAGCCAGGAGAAAAATGGGCTGAGAGATTACCTGAACTTGACCTTGGGAT
CCAAGATCATGAGGCTAAATCAAAGTTATGAAGAACTGAAGTTAAAGCAGAAGGAGCTCATGACATTGCA
ACACGACTTAGAGATGGCAACCATGGAGGCCCGAGAGGAAAATGAGGAGCTCAAGAAGGAGATAAATTTC
TATAGTAACCTGCACAGCCGGGCCCTAATGGAGAACAATCTTATAAAGAAGAAGTTGATGACATTGCAGC
AGGAGAGCAAGGAAGTACAGGCTGAATGGGCCAGCATTCAACAGCATTTGGACGTGAACCTGAGTGGTAA
AGACGAACAGGAGAAGAACAGCATCCTTGACACTCAGGAACATCAGGTCTCAGAAACTGCAAGAGAGCTG
GGATTGGCCACAGATCAAGAAGACAGCATCCTGCAGAATGAGTTGCCACCCCAGGAGGCCCCTGCTGAGG
AGTTGTCACCCCAGGAGGCCCCTGCTGAGGAGTTGCCACCCCAGGAGGCCCCTACTGAGGAGTTGCCACC
CCAGTAG

Translation (258 aa):
MTMCVRLRRLFQRVNVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEEL
MEEIQLISQEKNGLRDYLNLTLGSKIMRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINF
YSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQEKNSILDTQEHQVSETAREL
GLATDQEDSILQNELPPQEAPAEELSPQEAPAEELPPQEAPTEELPPQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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