NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40734.1 Public Mus musculus 9 Copb2 23 108 98 CCDS HistoryNCBI Gene:50797Re-query CCDS DB by CCDS ID:40734.1Re-query CCDS DB by GeneID:50797See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035033.6 ENSMUSP00000035033.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035033.6Link to Ensembl Protein Viewer:ENSMUSP00000035033.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035033Re-query CCDS DB by Protein ID:ENSMUSP00000035033
Original member Current member NCBI NM_015827.2 NP_056642.1 Accepted alive Link to Nucleotide Sequence:NM_015827.2Link to Protein Sequence:NP_056642.1Re-query CCDS DB by Nucleotide ID:NM_015827Re-query CCDS DB by Protein ID:NP_056642Link to BLAST:NP_056642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056642.1 905 O55029 905 100% 0 0

Chromosomal Locations for CCDS 40734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98563821 98563823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98567993 98568130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98570306 98570392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98570583 98570709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98571494 98571642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98573435 98573581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98574066 98574165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98576958 98577100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98577328 98577527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98578981 98579091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98580082 98580170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98580258 98580364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98581135 98581278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98582272 98582402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98582690 98582897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98584983 98585093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98585932 98586146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98587040 98587132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98587225 98587405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98587552 98587620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98587761 98587829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98588045 98588140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGCCTCTTCGACTTGACATCAAGAGAAAGCTGACTGCTAGGTCTGACCGAGTTAAGAGCGTGGATTTGC
ATCCCACAGAGCCATGGATGTTGGCTAGTCTTTACAATGGCAGTGTGTGTGTTTGGAATCATGAAACTCA
GACACTGGTGAAGACGTTTGAAGTATGTGATCTTCCTGTTCGAGCTGCAAAGTTTGTCGCAAGGAAGAAC
TGGGTGGTGACAGGAGCAGACGATATGCAGATCAGAGTGTTCAATTATAACACCCTGGAGAGGGTGCATA
TGTTTGAAGCACACTCGGATTACATTCGTTGTATTGCTGTTCATCCCACCCAGCCGTTCATTCTCACCAG
CAGTGATGACATGCTTATTAAGCTCTGGGACTGGGATAAAAAATGGTCTTGTTCACAAGTGTTTGAAGGA
CACACGCACTACGTTATGCAGATTGTGATAAACCCCAAAGATAACAATCAGTTTGCCAGTGCATCTCTCG
ACAGGACCATCAAGGTGTGGCAGCTGGGCTCCTCATCACCAAACTTCACTCTGGAAGGACATGAAAAAGG
CGTGAATTGCATTGACTACTACAGTGGTGGTGACAAGCCATACCTCATTTCAGGTGCAGATGACCGGCTT
GTTAAAATATGGGATTATCAGAACAAAACGTGTGTGCAGACCCTGGAGGGGCATGCCCAGAATGTGTCGT
GTGCGAGCTTCCATCCTGAGCTGCCCATCATCATCACAGGGTCAGAAGACGGAACTGTGCGAATCTGGCA
TTCTAGCACCTACCGGCTTGAGAGCACGCTGAATTACGGAATGGAGAGGGTGTGGTGTGTGGCCAGTCTG
AGAGGGTCCAACAATGTCGCTCTGGGCTATGATGAAGGGAGCATCATTGTTAAGCTTGGTCGGGAGGAAC
CTGCCATGTCCATGGATGCCAATGGAAAGATAATCTGGGCCAAGCATTCAGAAGTCCAGCAGGCCAACCT
GAAAGCAATGGGTGACACTGAGATTAAAGATGGAGAAAGATTGCCACTGGCAGTAAAGGACATGGGCAGT
TGTGAAATATATCCACAGACCATTCAGCACAATCCTAATGGGAGGTTTGTTGTGGTATGTGGTGATGGGG
AGTATATCATCTACACAGCAATGGCATTGAGGAACAAGAGCTTCGGGTCTGCCCAGGAGTTTGCATGGGC
CCACGATTCTTCAGAGTATGCAATAAGAGAAAGCAACAGTATTGTAAAGATATTTAAAAACTTTAAGGAA
AAAAAATCATTTAAACCCGATTTTGGAGCTGAAAGTATCTATGGGGGCTTCTTGCTGGGAGTCAGATCTG
TAAATGGCTTAGCCTTCTATGACTGGGAGAATACTGAACTCATCCGCAGAATTGAAATTCAGCCCAAGCA
CATCTTCTGGTCTGACTCTGGAGAGCTGGTCTGTATCGCCACCGAGGAGTCATTTTTTATTCTTAAATAT
CTGTCAGAAAAAGTCTTGGCTGCACAGGAAACACATGAGGGAGTTACTGAAGATGGCATTGAAGACGCCT
TTGAGGTTCTTGGTGAAATTCAGGAAATTGTGAAAACTGGGCTGTGGGTAGGTGACTGCTTCATTTACAC
AAGTTCTGTGAACAGATTAAACTATTACGTGGGAGGAGAGATAGTCACCATCGCCCACCTGGACAGGACA
ATGTATCTTCTGGGCTATATTCCAAAAGACAATAGACTTTATCTGGGGGATAAGGAATTGAATATTGTTA
GCTACTCCCTGTTGGTTTCAGTCCTGGAATACCAGACTGCTGTCATGCGGAGGGATTTTAGCATGGCGGA
TAAAGTCCTCCCTACCATCCCCAAAGAACAGAGGACCAGAGTTGCACACTTTTTGGAAAAACAGGGCTTC
AAGCAGCAAGCACTTACAGTATCCACAGATCCTGAACATCGTTTTGAGCTTGCTCTTCAACTTGGAGAGT
TGAAAATTGCTTACCAGTTAGCAGTGGAAGCAGAGTCGGAGCAGAAGTGGAAACAACTTGCTGAACTTGC
CATTAGTAAATGTCAGTTCAGCCTAGCCCAGGAGTGTCTGCACCATGCTCAGGATTATGGTGGTCTGCTG
CTCTTGGCCACTGCTTCTGGAAATGCTAGTATGGTGAACAAGCTGGCAGAAGGTGCGGAGAGAGACGGCA
AAAATAACGTGGCATTCATGAGCTATTTTTTACAGGGCAAGCTTGATGCTTGCCTAGAGCTCTTGATCAG
AACAGGAAGACTCCCAGAAGCTGCCTTCCTGGCCCGAACTTACTTACCCAGTCAGGTCTCAAGGGTGGTG
AAACTGTGGAGGGAGAATCTCTCAAAAGTCAACCAGAAAGCAGCAGAATCCCTTGCTGATCCTACAGAGT
ATGAAAACCTTTTCCCTGGATTAAAAGAAGCCTTTGTTGTTGAAGAATGGGTGAAGGAGACACATGCGGA
TTTGTGGCCAGCCAAGCAGTACCCTCTTGTCACGCCAAATGAAGAGAGAAATGTTATGGAAGAGGCAAAA
GGCTTTCAGCCCTCAAGACCCACAGCCCAGCAGGAACCTGATGGAAAACCTGCTTCTAGCCCAGTTATCA
TGGCCTCCCAAACTACCCACAAAGAAGAAAAGAGTTTACTAGAACTAGAAGTTGATTTGGATAACTTGGA
ATTAGAGGATATTGACACAACAGACATTAATCTGGATGAAGATATTCTGGATGATTAA

Translation (905 aa):
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKN
WVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEG
HTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRL
VKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASL
RGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGS
CEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKY
LSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRT
MYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGF
KQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLL
LLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVV
KLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEEAK
GFQPSRPTAQQEPDGKPASSPVIMASQTTHKEEKSLLELEVDLDNLELEDIDTTDINLDEDILDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH