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Report for CCDS37042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37042.1 Public Mus musculus 15 Brix1 23 108 98 CCDS HistoryNCBI Gene:67832Re-query CCDS DB by CCDS ID:37042.1Re-query CCDS DB by GeneID:67832See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022855.11 ENSMUSP00000022855.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022855.11Link to Ensembl Protein Viewer:ENSMUSP00000022855.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022855Re-query CCDS DB by Protein ID:ENSMUSP00000022855
Original member Current member NCBI NM_026396.3 NP_080672.3 Accepted alive Link to Nucleotide Sequence:NM_026396.3Link to Protein Sequence:NP_080672.3Re-query CCDS DB by Nucleotide ID:NM_026396Re-query CCDS DB by Protein ID:NP_080672Link to BLAST:NP_080672.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080672.3 353 Q9DCA5 353 100% 0 0

Chromosomal Locations for CCDS 37042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10476327 10476596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10476807 10476935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10478669 10478770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10478893 10478943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10479073 10479146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10479249 10479298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10479581 10479651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10481716 10481759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10483295 10483406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10485735 10485893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGCGGCGACCAAGAGAAAGCGGCGTGGAGGCTTGGAGGTTCAAGCGAAGAAGCCAAAAAGGAGCTCGA
AAGATGCCGGGCAGCCAGCTAAGCAGGCCGATGTGGCCAAAGAGGCGGAGGAGGAAAATAGAGATCGTAT
TCCAGGTCCGGTTTGCAAGGGCAAATGGAAAAATAAGGAACGGATCCTCATCTTTTCTTCCAGAGGAATA
AATTTCAGAACAAGACACTTAATGCAGGACTTGAGAATGTTGATGCCTCATTCTAAAGCAGATACTAAAA
TGGATCGTAAAGATAAATTATTTGTGATAAATGAGGTCTGTGAAATGAAAAATTGCAACAAATGCATCTA
CTTTGAAGCTAAGAAAAAACAGGATCTCTATATGTGGCTTTCAAATTCACCTCATGGTCCATCTGCCAAA
TTCTTGGTTCAAAATATTCATACCCTGGCTGAATTAAAGATGACTGGAAACTGTTTGAAAGGTTCTCGGC
CCCTTTTGTCTTTTGACCCTGCTTTTGATGACTTGCCACATTATGCTTTGTTAAAGGAATTCTTAATTCA
GATCTTCAGTACGCCACGATACCATCCCAAGAGTCAGCCGTTTGTGGACCACGTGTTTACGTTCACCATT
CTGGATAACAGGATATGGTTCCGGAACTTCCAGATTATAGAAGAAGACGCTGCTCTAGTGGAAATAGGAC
CTCGTTTTGTTTTAAATCTCATAAAGATTTTTCAGGGAAGCTTTGGAGGACCAACCTTATATGAAAATCC
TCATTACCAGTCTCCAAACATGCATCGGCGTGTCATAAGATCCATCACAGCTGCCAAGTATAGAGAGAGA
CAGCAAGTCAAAGATGTTCAGAAACTGAGGAAGAAAGAACCAAAGACTATCCTTCCACATGACCCCACTG
CAGACGTGTTTGTTATACCAGCGGAGGAGAAGCCAGTAGAAATACAGTGGGTGAAACCAGAGCCTAAAGT
AGATCTGAAAGCAAGGAAGAGACGGATTTACAAAAGGCATCGGAAACTGCAACAGAAGATGAGCAGAGGG
AGTGCAAAGTGA

Translation (353 aa):
MAATKRKRRGGLEVQAKKPKRSSKDAGQPAKQADVAKEAEEENRDRIPGPVCKGKWKNKERILIFSSRGI
NFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAK
FLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTI
LDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRER
QQVKDVQKLRKKEPKTILPHDPTADVFVIPAEEKPVEIQWVKPEPKVDLKARKRRIYKRHRKLQQKMSRG
SAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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